awesome-r

A curated list of awesome R frameworks, libraries and software.

• Learning and Reference
  • Tutorials and Books
  • Examples and Exercises
  • Awesome Lists and Collections
• Language and Tooling
  • Compilers and Interpreters
  • Build Systems
  • Package Management
  • Linters and Formatters
  • Debugging and Profiling
  • Editor and IDE Support
• Web
  • Web Frameworks
  • HTTP and Networking Clients
  • Frontend and UI Components
  • Scraping and Crawling
• Data and Storage
  • Database Clients and ORMs
  • Serialization and Formats
• Machine Learning and AI
  • LLM and Inference
  • Machine Learning Frameworks
  • Natural Language Processing
  • Data Science and Analytics
• Networking and Distributed
  • Cloud and Infrastructure
• User Interface
  • Terminal and Console UI
  • Applications and End User Tools
• Graphics and Media
  • Graphics and Rendering
  • Image and Video
• Security
  • Authentication and Authorization
• Concurrency and Performance
  • Concurrency and Parallelism
• Testing and Quality
  • Testing
• Utilities
  • Logging and Configuration
  • Text Processing
  • Files and Operating System
  • Automation and Scripting
  • General Purpose Libraries
• Science and Math
  • Mathematics
  • Scientific Computing
• Other

Learning and Reference

Tutorials and Books

• cxli233/FriendsDontLetFriends - Friends don't let friends make certain types of data visualization - What are they and why are they bad.
• hadley/r4ds - R for data science: a book
• swirldev/swirl_courses - :mortar_board: A collection of interactive courses for the swirl R package.
• rmcelreath/stat_rethinking_2022 - Statistical Rethinking course winter 2022
• rmcelreath/rethinking - Statistical Rethinking course and book package
• rmcelreath/stat_rethinking_2023 - Statistical Rethinking Course for Jan-Mar 2023
• geocompx/geocompr - Geocomputation with R: an open source book
• griffithlab/rnaseq_tutorial - Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
• hadley/mastering-shiny - Mastering Shiny: a book
• swirldev/swirl - :cyclone: Learn R, in R.
• matloff/fasteR - Fast Lane to Learning R!
• rmcelreath/stat_rethinking_2026 - Statistical Rethinking Course 2026
• hadley/r-pkgs - Building R packages
• erikaduan/r_tips - R programming tips for data cleaning, data visualisation, statistical modelling and machine learning
• gadenbuie/tidyexplain - 🤹‍♀ Animations of tidyverse verbs using R, the tidyverse, and gganimate
• rstudio/learnr - Interactive Tutorials with R Markdown
• rmcelreath/stat_rethinking_2020 - Statistical Rethinking Course Winter 2020/2021
• tidymodels/TMwR - Code and content for "Tidy Modeling with R"
• ajdamico/asdfree - analyze survey data for free
• mca91/EconometricsWithR - 📖An interactive companion to the well-received textbook 'Introduction to Econometrics' by Stock & Watson (2015)
• MathiasHarrer/Doing-Meta-Analysis-in-R - [Read-Only] All R code and source files for the online guide "Doing Meta-Analysis with R: A Hands-On Guide"
• twbattaglia/RNAseq-workflow - A repository for setting up a RNAseq workflow
• rstats-wtf/what-they-forgot - "What They Forgot to Teach You About R" website / eBook
• jennybc/row-oriented-workflows - Row-oriented workflows in R with the tidyverse
• UMGCCCFCSR/CytometryInR - Course Website
• kabacoff/RiA2 - Source code for R in Action, Second Edition
• yusuzech/r-web-scraping-cheat-sheet - Guide, reference and cheatsheet on web scraping using rvest, httr and Rselenium.
• JoaquinAmatRodrigo/Estadistica-con-R - Apuntes personales sobre estadística, machine learning y lenguaje de programación R
• EasyD/IntroToDataScience - GitHub Repository to accompany my YouTube series of videos on Introductory Data Science using R.
• datacarpentry/R-ecology-lesson - Data Analysis and Visualization in R for Ecologists
• wch/rgcookbook - R Graphics Cookbook
• rstudio-education/shiny.rstudio.com-tutorial - Slides and exercises for the video tutorial at https://shiny.rstudio.com/tutorial/
• kolaczyk/sand - Statistical Analysis of Network Data with R, 2nd Edition
• mlr-org/mlr3book - Online version of Bischl, B., Sonabend, R., Kotthoff, L., & Lang, M. (Eds.). (2024). "Applied Machine Learning Using mlr3 in R". CRC Press.
• RamiKrispin/vscode-r - A Tutorial for Setting R Development Environment with VScode, Dev Containers, and Docker
• khanhnamle1994/statistical-learning - Lecture Slides and R Sessions for Trevor Hastie and Rob Tibshinari's "Statistical Learning" Stanford course
• eddelbuettel/gsir-te - Getting Started in R -- Tinyverse Edition
• OpenIntroStat/openintro - 📦 R package for data and supplemental functions for OpenIntro resources
• jennybc/ggplot2-tutorial - Teaching materials for the R package ggplot2
• cwickham/purrr-tutorial - A introduction to purrr
• jsta/r-docker-tutorial - A docker tutorial for reproducible research
• ben519/DataWrangling - The ultimate reference guide to data wrangling with Python and R
• jennybc/code-smells-and-feels - Talk on code smells and feels and how to change that via refactoring
• dgrapov/TeachingDemos - Bioinformatics related demos and tutorials using the R programming language
• rstudio/Intro - Course materials for "Introduction to Data Science with R", a video course by RStudio and O'Reilly Media
• echen/ggplot2-tutorial - Quick introduction to ggplot2 (no knowledge of R assumed)
• JustinMShea/wooldridge - The official R data package for "Introductory Econometrics: A Modern Approach". A vignette contains example models from each chapter.
• Pakillo/R-GIS-tutorial - Spatial data in R: using R as a GIS
• tidyverse/design - Tidyverse design principles
• trevorstephens/titanic - Getting Started With R
• MatsuuraKentaro/RStanBook - 『StanとRでベイズ統計モデリング』のサポートページです.
• youngwoos/Doit_R - <Do it! 쉽게 배우는 R 데이터 분석> 저장소
• datacamp/RDocumentation - R package to integrate rdocumentation.org into your R workflow
• hgeorgako/rfortraders - Quantitative Trading with R
• jennybc/send-email-with-r - How to send a bunch of email from R
• mikelove/bioc-refcard - Bioconductor cheat sheet
• seananderson/glmm-course - Workshop exercises on regression, GLMs, mixed-effects models, and GLMMs in R
• RamiKrispin/shinylive-r - A guide for deploying Shinylive R application into Github Pages
• GraphicsPrinciples/CheatSheet - Repository for the cheatsheet and R code for generating the examples displayed.
• rstudio-conf-2022/ggplot2-graphic-design - "Graphic Design with ggplot2", a 2-day rstudio::conf(2022) Workshop by Cédric Scherer
• byaxb/RDataAnalytics - Data Analytics with R, instructed by Xinbo Ai, at Beijing University of Posts and Telecommunications
• dupadhyaya/rAnalyticsHHE - Repository for Online Classes
• briatte/ida - Introduction to Data Analysis, using R (2013)
• swcarpentry/r-novice-gapminder - R for Reproducible Scientific Analysis
• swcarpentry/r-novice-inflammation - Programming with R
• ropensci/dev_guide - rOpenSci Packages: Development, Maintenance, and Peer Review
• TatevKaren/mathematics-statistics-for-data-science - Mathematical & Statistical topics to perform statistical analysis and tests; Linear Regression, Probability Theory, Monte Carlo Simulation, Statistical Sampling, Bootstrapping, Dimensionality reduction techniques (PCA, FA, CCA), Imputation techniques, Statistical Tests (Kolmogorov Smirnov), Robust Estimators (FastMCD) and more in Python and R.
• profandyfield/discovr - discovr package for R to accompany Discovering Statistics Using R and RStudio
• ropensci-archive/learngganimate - :no_entry: ARCHIVED :no_entry: (archived)
• robjhyndman/fpp3 - All data sets required for the examples and exercises in the book "Forecasting: principles and practice" (3rd ed, 2020) by Rob J Hyndman and George Athanasopoulos http://OTexts.org/fpp3/. All packages required to run the examples are also loaded.
• datasciencedojo/IntroToTextAnalyticsWithR - Public repo for the Data Science Dojo YouTube tutorial series "Introduction to Text Analytics with R".
• m-clark/mixed-models-with-R - Covers the basics of mixed models, mostly using @lme4
• ranalytics/r-tutorials - Приложения к книге "Статистический анализ и визуализация данных с помощью R"
• Manudecara/Algo-Trading - This is my github repository where I post trading strategies, tutorials and research on quantitative finance with R, C++ and Python. Some of the topics explored include: machine learning, high frequency trading, NLP, technical analysis and more. Hope you enjoy it!
• mattansb/Structural-Equation-Modeling-foR-Psychologists - Lesson files used in the Structural Equation Modeling for Psychologists.
• MatsuuraKentaro/Bayesian_Statistical_Modeling_with_Stan_R_and_Python - Kentaro Matsuura (2022). Bayesian Statistical Modeling with Stan, R, and Python. Springer, Singapore.
• JulianHill/R-Tutorials - Code from the r tutorial on my blog
• seanchrismurphy/A-Psychologists-Guide-to-R - A repository containing the course notes and worked examples for a six week course in the R statistical programming language aimed at helping psychology students and faculty to learn R. This course was taught live at the University of Melbourne, Australia in 2016.
• cloudly/Play-Econometrics-with-R - a brochure about "Play Econometrics with R"
• datacamp/courses-introduction-to-r - Introduction to R by Jonathan Cornelissen
• noamross/nyhackr-docker-talk - Slides, Code, and Links to Resources from "Docker for the User," delivered at nyhackr 2018-07-11
• dlab-berkeley/R-Fundamentals-Legacy - D-Lab's 12 hour introduction to R Fundamentals. Learn how to create variables and functions, manipulate data frames, make visualizations, use control flow structures, and more, using R in RStudio.
• mattansb/Practical-Applications-in-R-for-Psychologists - Lesson files for Practical Applications in R for Psychologists.
• oscarperpinan/spacetime-vis - Sources of the book "Displaying time series, spatial and space-time data with R" (1st Edition)
• dipanjanS/learning-social-media-analytics-with-r - This repository contains code and bonus content which will be added from time to time for the book "Learning Social Media Analytics with R" by Packt
• dlab-berkeley/R-Deep-Learning - Workshop (6 hours): Deep learning in R using Keras. Building & training deep nets, image classification, transfer learning, text analysis, visualization
• boboppie/kruschke-doing_bayesian_data_analysis - John K. Kruschke's Doing Bayesian Data Analysis: A Tutorial with R and BUGS
• datacarpentry/r-raster-vector-geospatial - Introduction to Geospatial Raster and Vector Data with R (archived)
• jennybc/debugging - Talk about general debugging strategies. How to be less confused and frustrated.
• jmstanto/data-science-r - R code and documentation for "Introduction to Data Science" by Jeffrey Stanton
• rstudio/bigdataclass - Two-day workshop that covers how to use R to interact databases and Spark
• rstudio-conf-2020/big-data - :wrench: Use dplyr to analyze Big Data :elephant:
• cosname/art-r-translation - 《R语言编程艺术》翻译项目文件
• dlab-berkeley/R-Fundamentals - D-Lab's 4 part, 8 hour introduction to R Fundamentals. Learn how to create variables and functions, manipulate data frames, make visualizations, use control flow structures, and more, using R in RStudio.

Examples and Exercises

• TheAlgorithms/R - Collection of various algorithms implemented in R.
• rdpeng/ProgrammingAssignment2 - Repository for Programming Assignment 2 for R Programming on Coursera
• z3tt/TidyTuesday - My contributions to the #TidyTuesday challenge, a weekly data visualization challenge. All plots are 💯 created in R with ggplot2.
• dmpe/R - Exercises (incl. analyses) with R language (math+statistics)
• ben519/MLPB - Machine Learning Problem Bible | Problem Set Here >>
• avehtari/BDA_R_demos - Bayesian Data Analysis demos for R
• susanli2016/Data-Analysis-with-R - Using gglot2, tidyr, dplyr, ggmap, choroplethr, shiny, logistic regression, clustering models and more
• dgrtwo/data-screencasts - Code from live exploratory analyses of data in R
• dupadhyaya/Ranalytics18 - My work on Analytics and Research in Data Science
• tashapiro/tanya-data-viz - Personal data visualization side projects.
• avehtari/ROS-Examples - Regression and other stories R examples
• jrnold/r4ds-exercise-solutions - Exercise solutions to "R for Data Science" (archived)
• Tazinho/Advanced-R-Solutions - Set of solutions for the Advanced R programming book
• r-rust/hellorust - Template R package with rust bindings
• ajtulloch/Elements-of-Statistical-Learning - Contains LaTeX, SciPy and R code providing solutions to exercises in Elements of Statistical Learning (Hastie, Tibshirani & Friedman)
• nrennie/tidytuesday - This repository contains the R, Python, D3, and Svelte code used to produce my visualisations for the #TidyTuesday challenges.
• XSaintX/book-R-DataAnalysis - This repository contains R code about analysing data from the book Analisis de datos con R
• toddwschneider/shiny-salesman - Traveling salesman with simulated annealing, R, and Shiny
• adamribaudo/storytelling-with-data-ggplot - Recreation of Cole Nussbaumer Knaflic's Storytelling with Data plots using R an ggplot2
• dataspelunking/MLwR - Machine Learning with R
• maxtoki/baseball_R - Companion to Analyzing Baseball Data with R
• skranz/RTutor - Creating interactive R Problem Sets. Automatic hints and solution checks. (Shiny or RStudio)
• DUanalytics/rAnalytics - Analytics in R
• m-clark/Miscellaneous-R-Code - Code that might be useful to others for learning/demonstration purposes, specifically along the lines of modeling and various algorithms. Superseded by the models-by-example repo.
• jennybc/r-graph-catalog - All graphs in “Creating More Effective Graphs”, made with R package ggplot2.
• danhalligan/ISLRv2-solutions - Complete solutions & exercises for "An Introduction to Statistical Learning with Applications in R second edition"
• jkaupp/tidytuesdays - Entries for tidytuesday
• ttvand/Santander-Product-Recommendation - 2nd Place Solution of the Kaggle Competition - Santander Product Recommendation
• faridcher/ml-course - Starter code of Prof. Andrew Ng's machine learning MOOC in R statistical language
• tashapiro/TidyTuesday - Data visualizations produced for #TidyTuesdayChallenge, a challenge hosted by R for Data Science.
• kjhealy/revere - Finding Paul Revere
• cavaunpeu/statistical-rethinking - Solutions for the practice problems
• jennybc/repurrrsive - Recursive lists to use in teaching and examples, because there is no mtcars for lists.
• jseidman/hadoop-R - Example code for running R on Hadoop
• R-ArcGIS/r-sample-tools - Sample tools illustrating R usage in geoprocessing scripts (archived)
• Keiku/kaggle-airbnb-recruiting-new-user-bookings - 2nd Place Solution in Kaggle Airbnb New User Bookings competition
• MarkEdmondson1234/ga-dashboard-demo - A demo on how to build your own Google Analytics dashboard with R, Shiny and MySQL
• minimaxir/reddit-bigquery - Code + Jupyter notebook for analyzing and visualizing Reddit Data quickly and easily
• amrrs/animated_bar_charts_in_R - Code to demo how to build Animated Bar Charts in R
• gimoya/theBioBucket-Archives - R-Code used in my blog theBioBucket

Awesome Lists and Collections

• qinwf/awesome-R - A curated list of awesome R packages, frameworks and software.
• ujjwalkarn/DataScienceR - a curated list of R tutorials for Data Science, NLP and Machine Learning
• EmilHvitfeldt/r-color-palettes - Comprehensive list of color palettes available in R ❤️🧡💛💚💙💜
• nanxstats/awesome-shiny-extensions - 🐝 Awesome R and Python packages offering extended UI or server components for the web framework Shiny
• grabear/awesome-rshiny - An awesome R-shiny list!
• pbiecek/xai_resources - Interesting resources related to XAI (Explainable Artificial Intelligence)
• rweekly/rweekly.org - R Weekly
• mdozmorov/scRNA-seq_notes - A list of scRNA-seq analysis tools
• rstudio/RStartHere - A guide to some of the most useful R Packages that we know about
• krzjoa/awesome-r-dataviz - Curated resources about Data Visualization, Drawing & Publishing in R
• scRNA-tools/scRNA-tools - Table of software for the analysis of single-cell RNA-seq data.
• mkearney/rstudiothemes - A curated list of RStudio themes found on Github
• romantseg/rbooks - A curated list of #rstats books
• sowla/useR2019-materials - Links to materials from tutorials and talks from useR 2019
• trinker/topicmodels_learning - A repository of learning & R resources related to topic models
• ropensci-archive/opendata - :no_entry: ARCHIVED :no_entry: (archived)
• cran-task-views/WebTechnologies - CRAN Task View: WebTechnologies
• benmarwick/ctv-archaeology - CRAN Task View: Archaeological Science
• cran-task-views/Hydrology - CRAN Task View: Hydrology

Language and Tooling

Compilers and Interpreters

• rstudio/reticulate - R Interface to Python
• wch/r-source - Read-only mirror of R source code from https://svn.r-project.org/R/, updated hourly. See the build instructions on the wiki page.
• bedatadriven/renjin - JVM-based interpreter for the R language for the statistical analysis.
• SurajGupta/r-source - R Source Code
• JuliaInterop/JuliaCall - Embed Julia in R
• microsoft/microsoft-r-open - Microsoft R Open Source
• jeroen/V8 - Embedded JavaScript Engine for R
• dirkschumacher/llr - Lisp-like-R: A clojure inspired lisp that compiles to R in R
• t-kalinowski/quickr - R to Fortran Transpiler
• r-devel/r-svn - Mirror of the R svn with CI for testing patches
• r-lib/evaluate - A version of eval for R that returns more information about what happened
• hadley/lazyeval - Lazy evaluation: an alternative to non-standard evaluation (NSE) for R
• crowding/vadr - Making R a better language
• MilesMcBain/friendlyeval - A friendly interface to tidyeval/rlang that will excuse itself when you're done.
• dbdahl/rscala - The Scala interpreter is embedded in R and callbacks to R from the embedded interpreter are supported. Conversely, the R interpreter is embedded in Scala.

Build Systems

• ropensci/drake - An R-focused pipeline toolkit for reproducibility and high-performance computing
• ropensci/targets - Function-oriented Make-like declarative workflows for R
• richfitz/remake - Make-like declarative workflows in R
• extendr/rextendr - An R package that helps scaffolding extendr-enabled packages or compiling Rust code dynamically
• JohnCoene/packer - webpack + npm + R = ❤️

Package Management

• r-lib/devtools - Tools to make an R developer's life easier
• rstudio/renv - renv: Project environments for R.
• klmr/box - Write reusable, composable and modular R code
• r-lib/usethis - Set up commonly used 📦 components
• r-lib/pak - A fresh approach to package installation
• r-lib/pkgdown - Generate static html documentation for an R package
• r-lib/roxygen2 - Generate R package documentation from inline R comments
• rstudio/packrat - Packrat is a dependency management system for R
• ropensci/rix - Reproducible Data Science environments for R with Nix
• eddelbuettel/r2u - CRAN as Ubuntu Binaries
• r-hub/rhub - R-hub API client
• r-lib/remotes - Install R packages from GitHub, GitLab, Bitbucket, git, svn repositories, URLs
• talgalili/installr - Functions for installing softwares from within R
• ankane/jetpack - A friendly package manager for R
• cynkra/fledge - Wings for your R packages: Streamline the process of versioning R packages and updating NEWS
• andrie/miniCRAN - R package to create internally consistent, mini version of CRAN
• RevolutionAnalytics/checkpoint - Install R packages from snapshots on checkpoint-server
• MilesMcBain/capsule - An inversion of renv for low effort reproducible R package libraries
• eddelbuettel/drat - Drat R Archive Template
• r-lib/available - Check if a package name is available to use
• AndreaCirilloAC/updateR - update your R version in a breeze ( on OSX) √
• WLOGSolutions/RSuite - The most complete R development and data science platform.
• r-lib/desc - Manipulate DESCRIPTION files
• mkearney/pkgverse - 📦🔭🌠 Create your own universe of packages à la tidyverse

Linters and Formatters

• r-lib/lintr - Static Code Analysis for R
• r-lib/styler - Non-invasive pretty printing of R code
• ropensci-review-tools/goodpractice - Advice on R Package Building
• lorenzwalthert/precommit - pre-commit hooks for R projects
• yihui/formatR - Format R Code Automatically
• hadley/strict - Make R a little bit stricter
• pharmaR/riskmetric - Metrics to evaluate the risk of R packages
• uptake/pkgnet - R package for analyzing other R packages via graph representations of their dependencies

Debugging and Profiling

• r-lib/lobstr - Understanding complex R objects with tools similar to str()
• jimhester/lookup - Lookup R full function definitions, including compiled code, S3 and S4 methods.
• hadley/pryr - Pry open the covers of R
• cynkra/constructive - Display Idiomatic Code to Construct Most R Objects
• r-lib/debugme - Easy and efficient debugging for R packages

Editor and IDE Support

• MilesMcBain/datapasta - On top of spaghetti, all covered in cheese....
• REditorSupport/languageserver - An implementation of the Language Server Protocol for R
• ThinkR-open/remedy - RStudio Addins to Simplify Markdown Writing
• anthonynorth/rscodeio - An RStudio theme inspired by Visual Studio Code.
• max-alletsee/rstudio-themes - A collection of themes for RStudio
• dokato/todor - TODOr - RStudio add-in for finding TODO, FIXME, CHANGED etc. comments in your code.
• lionel-/codegrip - Reshaping and navigation commands for R code
• rstudio/rstudioapi - Safely access RStudio's API (when available)
• r-lib/tree-sitter-r - Tree-sitter grammar for R
• holgerbrandl/r4intellij - An integration of the R programming language into Intellij IDEA (archived)
• dreamRs/prefixer - Prefix function with their namespace & other development tools
• mwip/beautifyR - RStudio addin for formatting Rmarkdown tables
• tjmahr/WrapRmd - RStudio addin for wrapping RMarkdown paragraphs

Web

Web Frameworks

• rstudio/shiny - Easy interactive web applications with R
• ThinkR-open/golem - A Framework for Building Robust Shiny Apps
• Appsilon/rhino - Build high quality, enterprise-grade Shiny apps at speed
• Appsilon/shiny.router - A minimalistic router for your Shiny apps.
• ambiorix-web/ambiorix - 🖥️ Web framework for R
• surveydown-dev/surveydown - Markdown-Based, Programmable Surveys Using R, Quarto, Shiny, and PostgreSQL
• jeffreyhorner/Rook - A web server interface for R
• bart6114/jug - jug: A Simple Web Framework for R

HTTP and Networking Clients

• r-lib/httr - httr: a friendly http package for R
• jennybc/googlesheets - Google Spreadsheets R API (archived)
• ropensci-archive/rtweet - 🐦 R client for interacting with Twitter's [stream and REST] APIs (archived)
• sillyplots/spotifyr - R wrapper for Spotify's Web API
• tidyverse/googlesheets4 - Google Spreadsheets R API
• PMassicotte/gtrendsR - R functions to perform and display Google Trends queries
• Azure/Microsoft365R - R SDK for interacting with Microsoft 365 APIs
• pablobarbera/Rfacebook - Dev version of Rfacebook package: Access to Facebook API via R
• ropensci/osmdata - R package for downloading OpenStreetMap data
• ropensci/rnoaa - R interface to many NOAA data APIs
• abresler/nbastatR - NBA Stats API Wrapper and more for R
• DOI-USGS/dataRetrieval - This R package is designed to obtain USGS or EPA water quality sample data, streamflow data, and metadata directly from web services.
• rfsaldanha/microdatasus - Download de dados do DataSUS e pré-processamento no R.
• ropensci-archive/rplos - :warning: ARCHIVED :warning: R client for the PLoS Journals API (archived)
• 16EAGLE/getSpatialData - An R package 📦 making it easy to query, preview, download and preprocess multiple kinds of spatial data 🛰 via R. All beta.
• hudl/StatsBombR - This repository is an R package to easily stream StatsBomb data from the API using your log in credentials or from the Open Data GitHub repository cost free into R .
• mrkaye97/slackr - An R package for sending messages from R to Slack
• ropensci/taxize - A taxonomic toolbelt for R
• jessecambon/tidygeocoder - Geocoding Made Easy
• cjbarrie/academictwitteR - Repo for academictwitteR package to query the Twitter Academic Research Product Track v2 API endpoint. (archived)
• r-lib/httr2 - Make HTTP requests and process their responses. A modern reimagining of httr.
• ropensci-archive/fulltext - :warning: ARCHIVED :warning: Search across and get full text for OA & closed journals (archived)
• rOpenGov/eurostat - R tools for Eurostat data
• geoffjentry/twitteR - R based twitter client (archived)
• riatelab/osrm - Interface between R and the OpenStreetMap-based routing service OSRM (archived)
• vincentarelbundock/WDI - R package to download World Bank data
• jonocarroll/mathpix - Query the mathpix API to convert math images to LaTeX
• Chicago/RSocrata - Provides easier interaction with Socrata open data portals http://dev.socrata.com. Users can provide a 'Socrata' data set resource URL, or a 'Socrata' Open Data API (SoDA) web query, or a 'Socrata' "human-friendly" URL, returns an R data frame. Converts dates to 'POSIX' format. Manages throttling by 'Socrata'.
• r-lib/gmailr - Access the Gmail RESTful API from R.
• r-lib/gh - Minimalistic GitHub API client in R
• ropensci/qualtRics - Download ⬇️ Qualtrics survey data directly into R!
• USEPA/elevatr - An R package for accessing elevation data
• ropensci/rentrez - talk with NCBI entrez using R
• gojiplus/tuber - :sweet_potato: Access YouTube from R
• hrecht/censusapi - R package to retrieve U.S. Census data and metadata via API
• skardhamar/rga - R Google Analytics
• ropensci/rgbif - Interface to the Global Biodiversity Information Facility API
• ropensci/rcrossref - R client for various CrossRef APIs
• fawda123/rStrava - Functions to access data from Strava's v3 API.
• daroczig/fbRads - Analyze and manage Facebook ads from R using this client library to access their Marketing APIs (archived)
• ropensci/osfr - R interface to the Open Science Framework (OSF)
• JesseVent/crypto - An R package that provides functions to retrieve historical and current cryptocurrency market data from CoinMarketCap's API. It allows users to access prices, exchange details, and global market information for various tokens.
• quandl/quandl-r - This is Quandl's R Package
• sewardlee337/finreportr - R package - Financial Data from U.S. Securities and Exchange Commission
• gshs-ornl/wbstats - wbstats: An R package for searching and downloading data from the World Bank API
• piersyork/owidR - An R Package for Importing Data from Our World in Data
• randyzwitch/RSiteCatalyst - R package to access Adobe Analytics Reporting API v1.4 (archived)
• keberwein/blscrapeR - A tool to gather, analyze and visualize data from the Bureau of Labor Statistics (BLS) API. Functions include segmentation, geographic analysis and visualization.
• MarkEdmondson1234/searchConsoleR - R interface with Google Search Console API v3, including Search Analytics.
• COVAIL/cognizer - R package to call IBM Watson services.
• andrewheiss/colourlovers - 🎨 📦 R Client for the COLOURlovers API
• ropensci-archive/rorcid - :warning: ARCHIVED :warning: A programmatic interface the Orcid.org API (archived)
• ropensci-archive/bomrang - :warning: ARCHIVED :warning: Australian government Bureau of Meteorology (BOM) data client for R (archived)
• pablobarbera/instaR - Dev version of instaR package: Access to Instagram API via R
• pablobarbera/streamR - Dev version of streamR package: Access to Twitter Streaming API via R
• ropensci/ckanr - R client for the CKAN API
• jburkhardt/RAdwords - Loading Google Adwords Data into R
• atlanhq/rLandsat - R Package to make Landsat8 data accessible (archived)

Frontend and UI Components

• dreamRs/shinyWidgets - shinyWidgets : Extend widgets available in shiny
• ramnathv/htmlwidgets - HTML Widgets for R
• daattali/shinyjs - 💡 Easily improve the user experience of your Shiny apps in seconds
• Appsilon/shiny.semantic - Shiny support for powerful Fomantic UI library.
• RinteRface/shinydashboardPlus - extensions for shinydashboard
• RinteRface/bs4Dash - Bootstrap 4 shinydashboard using AdminLTE3
• mitchelloharawild/icons - R package to easily insert web icons to RMarkdown
• nik01010/dashboardthemes - No Longer Supported (archived)
• rstudio/fontawesome - Easily insert FontAwesome icons into R Markdown docs and Shiny apps
• Appsilon/shiny.fluent - Microsoft's Fluent UI for Shiny apps
• Yang-Tang/shinyjqui - jQuery UI Interactions and Effects for Shiny
• Appsilon/semantic.dashboard - Quick, beautiful and customizable dashboard template for Shiny based on shiny.semantic and Fomantic UI.
• daattali/shinyalert - 🗯️ Easily create pretty popup messages (modals) in Shiny
• merlinoa/shinyFeedback - display user feedback next to Shiny inputs
• JohnCoene/cicerone - 🏛️ Give tours of your Shiny apps (archived)
• timelyportfolio/listviewer - R htmlwidget to view lists
• gadenbuie/countdown - ⏲ countdown timer for slides and HTML docs in Quarto, R Markdown, and Shiny
• dreamRs/datamods - Shiny modules to import and manipulate data into an application or addin
• ijlyttle/bsplus - Shiny and R Markdown addons to Bootstrap 3
• Novartis/tidymodules - An Object-Oriented approach to Shiny modules
• vue-r/vueR - vue.js for R
• carlganz/rintrojs - Wrapper for the Intro.js library
• rstudio/sortable - R htmlwidget for Sortable.js
• nteetor/yonder - A bslib continuation.
• rte-antares-rpackage/manipulateWidget - Add More Interactivity to htmlwidgets
• emitanaka/anicon - Animated icons for R markdown and Shiny apps
• emitanaka/shinycustomloader - Add a custom loader for R shiny
• jasdumas/shinyLP - A R package for Bootstrap Components to make Landing Home Pages for Shiny :globe_with_meridians:
• RinteRface/fullPage - 📄 fullPage.js, pagePiling.js and multiScroll.js for shiny
• RinteRface/shinybulma - 🌐 Bulma.io for Shiny

Scraping and Crawling

• tidyverse/rvest - Simple web scraping for R
• JaseZiv/worldfootballR - A wrapper for extracting world football (soccer) data from FBref, Transfermark, Understat (archived)
• maksimhorowitz/nflscrapR - R Package for Scraping and Aggregating NFL Data
• nflverse/nflfastR - A Set of Functions to Efficiently Scrape NFL Play by Play Data
• salimk/Rcrawler - An R web crawler and scraper
• ropensci/RSelenium - An R client for Selenium Remote WebDriver
• dmi3kno/polite - Be nice on the web
• rstudio/chromote - Chrome Remote Interface for R
• feddelegrand7/ralger - ralger makes it easy to scrape a website. Built on the shoulders of titans: rvest, xml2.
• RLesur/crrri - A Chrome Remote Interface written in R
• cpsievert/pitchRx - Tools for scraping MLB Gameday data and Visualizing PITCHf/x
• JonasSchroeder/InstaCrawlR - Crawl public Instagram data using R scripts without API access token. See InstaCrawlR Instructions.pdf
• corynissen/fitbitScraper - R package to scrape fitbit data
• hrbrmstr/splashr - :sweat_drops: Tools to Work with the 'Splash' JavaScript Rendering Service in R

Data and Storage

Database Clients and ORMs

• r-dbi/bigrquery - An interface to Google's BigQuery from R.
• cynkra/dm - Working with relational data models in R
• tidyverse/dbplyr - Database (DBI) backend for dplyr
• r-dbi/RPostgres - A DBI-compliant interface to PostgreSQL
• r-dbi/RSQLite - R interface for SQLite
• r-dbi/DBI - A database interface (DBI) definition for communication between R and RDBMSs
• rstudio/pool - Object Pooling in R
• nicolewhite/RNeo4j - Neo4j Driver for R. (archived)
• duckdb/duckdb-r - The duckdb R package
• ankane/dbx - A fast, easy-to-use database library for R
• r-dbi/RMariaDB - An R interface to MariaDB
• prestodb/RPresto - DBI-based adapter for Presto for the statistical programming language R.
• hrbrmstr/sergeant - :guardsman: Tools to Transform and Query Data with 'Apache' 'Drill'
• nexr/RHive - RHive is an R extension facilitating distributed computing via Apache Hive.

Serialization and Formats

• tidyverse/readr - Read flat files (csv, tsv, fwf) into R
• fstpackage/fst - Lightning Fast Serialization of Data Frames for R
• gesistsa/rio - 🐟 A Swiss-Army Knife for Data I/O
• ropensci/tabulapdf - Bindings for Tabula PDF Table Extractor Library
• awalker89/openxlsx - R package for .xlsx file reading and writing.
• ycphs/openxlsx - openxlsx - a fast way to read and write complex xslx files
• r-lib/xml2 - Bindings to libxml2
• JanMarvin/openxlsx2 - openxlsx2 - read, write and modify xlsx files
• tomwenseleers/export - R package for streamlined export of graphs and data tables.
• colearendt/tidyjson - Tidy your JSON data in R with tidyjson
• geoarrow/geoarrow-r - Extension types for geospatial data for use with 'Arrow'
• hrbrmstr/docxtractr - :scissors: Extract Tables from Microsoft Word Documents with R
• r-lib/ymlthis - write YAML for R Markdown, bookdown, blogdown, and more
• ropensci/dataspice - :hot_pepper: Create lightweight schema.org descriptions of your datasets
• ropensci/geojsonio - Convert many data formats to & from GeoJSON & TopoJSON
• ropensci/jqr - R interface to jq
• cstawitz/roomba - General purpose API response tidier
• miraisolutions/xlconnect - XLConnect: Excel Connector for R

Machine Learning and AI

LLM and Inference

• MichelNivard/gptstudio - GPT RStudio addins that enable GPT assisted coding, writing & analysis
• tidyverse/ellmer - Call LLM APIs from R
• jcrodriguez1989/chatgpt - Interface to ChatGPT from R
• posit-dev/mcptools - Model Context Protocol For R
• tidyverse/ragnar - RAG in R
• irudnyts/openai - An R package-wrapper around OpenAI API
• samterfa/openai - This R package provides an SDK to the Open AI API
• isinaltinkaya/gptchatteR - An experimental and unofficial wrapper for interacting with OpenAI GPT models in R.

Machine Learning Frameworks

• mlr-org/mlr - Machine Learning in R
• topepo/caret - caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models
• rstudio/tensorflow - TensorFlow for R
• mlr-org/mlr3 - mlr3: Machine Learning in R - next generation
• rstudio/keras3 - R Interface to Keras
• tidymodels/recipes - Pipeable steps for feature engineering and data preprocessing to prepare for modeling
• giuseppec/iml - iml: interpretable machine learning R package
• tidymodels/lime - Local Interpretable Model-Agnostic Explanations (R port of original Python package)
• mkearney/tweetbotornot - 🤖 R package for detecting Twitter bots via machine learning
• jlmelville/uwot - An R package implementing the UMAP dimensionality reduction method.
• tidymodels/rsample - Classes and functions to create and summarize resampling objects
• ModelOriented/modelStudio - 📍 Interactive Studio for Explanatory Model Analysis
• tidymodels/stacks - An R package for tidy stacked ensemble modeling
• ecpolley/SuperLearner - Current version of the SuperLearner R package
• microsoft/finnts - Microsoft Finance Time Series Forecasting Framework (FinnTS) is a forecasting package that utilizes cutting-edge time series forecasting and parallelization on the cloud to produce accurate forecasts for financial data.
• tidymodels/tidypredict - Run predictions inside the database
• asardaes/dtwclust - R Package for Time Series Clustering Along with Optimizations for DTW
• AppliedDataSciencePartners/xgboostExplainer - An R package that makes xgboost models fully interpretable
• AdrianAntico/AutoQuant - Automation framework for machine learning, forecasting, model evaluation, and interpretation.
• ModelOriented/randomForestExplainer - A set of tools to understand what is happening inside a Random Forest
• OHDSI/PatientLevelPrediction - An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
• mhahsler/recommenderlab - recommenderlab - Lab for Developing and Testing Recommender Algorithms - R package
• Laurae2/Laurae - Advanced High Performance Data Science Toolbox for R by Laurae
• mhahsler/arules - Mining Association Rules and Frequent Itemsets with R
• mlr-org/mlrMBO - Toolbox for Bayesian Optimization and Model-Based Optimization in R
• dselivanov/rsparse - Fast and accurate machine learning on sparse matrices - matrix factorizations, regression, classification, top-N recommendations.
• DoubleML/doubleml-for-r - DoubleML - Double Machine Learning in R
• mlr-org/mlr3proba - Probabilistic Learning for mlr3
• rtemis-org/rtemis - Advanced Machine Learning and Visualization
• mlr-org/mlr3pipelines - Dataflow Programming for Machine Learning in R
• robertzk/syberia - Syberia: The development framework for R
• ndphillips/FFTrees - An R package to create and visualise fast-and-frugal decision trees (FFTs)
• tkonopka/umap - Uniform Manifold Approximation and Projection - R package
• nredell/forecastML - An R package with Python support for multi-step-ahead forecasting with machine learning and deep learning algorithms
• beechung/Latent-Factor-Models - R functions for fitting latent factor models with internal computation in C/C++
• EagerAI/fastai - R interface to fast.ai
• ropensci-archive/umapr - :no_entry: ARCHIVED :no_entry: Wraps UMAP Algorithm for Dimension Reduction (archived)
• HealthCatalyst/healthcareai-r - R tools for healthcare machine learning

Natural Language Processing

• juliasilge/tidytext - Text mining using tidy tools :sparkles::page_facing_up::sparkles:
• quanteda/quanteda - An R package for the Quantitative Analysis of Textual Data
• dselivanov/text2vec - Fast vectorization, topic modeling, distances and GloVe word embeddings in R.
• trinker/sentimentr - Dictionary based sentiment analysis that considers valence shifters
• bstewart/stm - An R Package for the Structural Topic Model
• mjockers/syuzhet - An R package for the extraction of sentiment and sentiment-based plot arcs from text
• bmschmidt/wordVectors - An R package for creating and exploring word2vec and other word embedding models
• quanteda/spacyr - R wrapper to spaCy NLP
• computationalstylistics/stylo - R package for stylometric analyses
• cbail/textnets - R package to perform automated text analysis using network techniques
• mkearney/resist_oped - 🕵🏽‍♀️ Identifying the author behind New York Time’s op-ed from inside the Trump White House.
• ropensci/googleLanguageR - R client for the Google Translation API, Google Cloud Natural Language API and Google Cloud Speech API
• ropensci/textreuse - Detect text reuse and document similarity
• Twitter-Sentiment-Analysis/R - Sentiment analysis and visualization of real-time tweets using R
• ropensci/tokenizers - Fast, Consistent Tokenization of Natural Language Text
• farach/huggingfaceR - Hugging Face state-of-the-art models in R
• jonathanbratt/RBERT - Implementation of BERT in R
• mkearney/textfeatures - 👷‍♂️ A simple package for extracting useful features from character objects 👷‍♀️
• OscarKjell/text - Using Transformers from HuggingFace in R
• gandalf1819/Stock-Market-Sentiment-Analysis - Identification of trends in the stock prices of a company by performing fundamental analysis of the company. News articles were provided as training data-sets to the model which classified the articles as positive or neutral. Sentiment score was computed by calculating the difference between positive and negative words present in the news article. Comparisons were made between the actual stock prices and the sentiment scores. Naive Bayes, OneR and Random Forest algorithms were used to observe the results of the model using Weka
• quanteda/stopwords - Multilingual Stopword Lists in R
• trinker/lexicon - A data package containing lexicons and dictionaries for text analysis
• TommyJones/textmineR - An aid for text mining in R, with a syntax that should be familiar to experienced R users. Provides a wrapper for several topic models that take similarly-formatted input and give similarly-formatted output. Has additional functionality for analyzing and diagnostics for topic models.
• ropensci-archive/monkeylearn - :no_entry: ARCHIVED :no_entry: Accesses the Monkeylearn API for Text Classifiers and Extractors (archived)

Data Science and Analytics

• tidyverse/ggplot2 - An implementation of the Grammar of Graphics in R
• tidyverse/dplyr - dplyr: A grammar of data manipulation
• Rdatatable/data.table - R's data.table package extends data.frame:
• twitter/AnomalyDetection - Anomaly Detection with R (archived)
• plotly/plotly.R - An interactive graphing library for R
• IndrajeetPatil/ggstatsplot - Enhancing {ggplot2} plots with statistical analysis 📊📣
• tylermorganwall/rayshader - R Package for 2D and 3D mapping and data visualization
• karthik/wesanderson - A Wes Anderson color palette for R
• rstudio/gt - Easily generate information-rich, publication-quality tables from R
• dreamRs/esquisse - RStudio add-in to make plots interactively with ggplot2
• tidyverse/tidyverse - Easily install and load packages from the tidyverse
• rich-iannone/DiagrammeR - Graph and network visualization using tabular data in R
• bbc/bbplot - R package that helps create and export ggplot2 charts in the style used by the BBC News data team
• facebookexperimental/Robyn - Robyn is an experimental, AI/ML-powered and open sourced Marketing Mix Modeling (MMM) package from Meta Marketing Science. Our mission is to democratise modeling knowledge, inspire the industry through innovation, reduce human bias in the modeling process & build a strong open source marketing science community.
• tidymodels/broom - Convert statistical analysis objects from R into tidy format
• sfirke/janitor - simple tools for data cleaning in R
• tidyverse/tidyr - Tidy Messy Data
• hrbrmstr/hrbrthemes - :lock_with_ink_pen: Opinionated, typographic-centric ggplot2 themes and theme components
• BlakeRMills/MetBrewer - Color palette package in R inspired by works at the Metropolitan Museum of Art in New York
• ddsjoberg/gtsummary - Presentation-Ready Data Summary and Analytic Result Tables
• thomasp85/ggraph - Grammar of Graph Graphics
• EmilHvitfeldt/paletteer - 🎨🎨🎨 Collection of most color palettes in a single R package
• jokergoo/circlize - Circular visualization in R
• sparklyr/sparklyr - R interface for Apache Spark
• ipea/geobr - Easy access to official spatial data sets of Brazil in R and Python
• easystats/see - :art: Visualisation toolbox for beautiful and publication-ready figures
• vincentarelbundock/modelsummary - Beautiful and customizable model summaries in R.
• joshuaulrich/quantmod - Quantitative Financial Modelling Framework
• r-tmap/tmap - R package for thematic maps
• Mikata-Project/ggthemr - Themes for ggplot2.
• mjskay/ggdist - Visualizations of distributions and uncertainty
• hms-dbmi/UpSetR - An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
• hrbrmstr/waffle - :maple_leaf: Make waffle (square pie) charts in R
• jalapic/engsoccerdata - English and European soccer results 1871-2022
• dkahle/ggmap - A package for plotting maps in R with ggplot2
• tidyverse/tibble - A modern re-imagining of the data frame
• jbkunst/highcharter - R wrapper for highcharts
• fastverse/collapse - Advanced and Fast Data Transformation in R
• rstudio/ggvis - Interactive grammar of graphics for R (archived)
• hrbrmstr/ggalt - :earth_americas: Extra Coordinate Systems, Geoms, Statistical Transformations & Scales for 'ggplot2'
• walkerke/tidycensus - Load US Census boundary and attribute data as 'tidyverse' and 'sf'-ready data frames in R
• daattali/timevis - 📅 Create interactive timeline visualizations in R
• tidyverse/dtplyr - Data table backend for dplyr
• christophergandrud/networkD3 - D3 JavaScript Network Graphs from R
• leedrake5/Russia-Ukraine - Equipment Loss Tracking
• strengejacke/sjPlot - sjPlot - Data Visualization for Statistics in Social Science
• amplab-extras/SparkR-pkg - R frontend for Spark
• JohnCoene/echarts4r - Echarts 5 for R
• davidgohel/flextable - table farming
• ggobi/ggally - R package that extends ggplot2
• DiskFrame/disk.frame - Fast Disk-Based Parallelized Data Manipulation Framework for Larger-than-RAM Data
• pola-rs/r-polars - Polars R bindings
• tidyverse/forcats - 🐈🐈🐈🐈: tools for working with categorical variables (factors)
• r-spatial/mapview - Interactive viewing of spatial data in R
• dcomtois/summarytools - R Package to Quickly and Neatly Summarize Data
• tidyverts/tsibble - Tidy Temporal Data Frames and Tools
• boxuancui/DataExplorer - Automate Data Exploration and Treatment
• sinhrks/ggfortify - Define fortify and autoplot functions to allow ggplot2 to handle some popular R packages.
• rstudio/r2d3 - R Interface to D3 Visualizations
• corybrunson/ggalluvial - ggplot2 extension for alluvial plots
• hadley/plyr - A R package for splitting, applying and combining large problems into simpler problems
• thomasp85/scico - Palettes for R based on the Scientific Colour-Maps
• ropensci/visdat - Preliminary Exploratory Visualisation of Data
• rudeboybert/fivethirtyeight - R package of data and code behind the stories and interactives at FiveThirtyEight
• LKremer/ggpointdensity - :chart_with_upwards_trend: :bar_chart: Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.
• ewenme/ghibli - Studio Ghibli colour palettes
• r-lib/scales - Tools for ggplot2 scales
• stan-dev/bayesplot - bayesplot R package for plotting Bayesian models
• data-cleaning/validate - Professional data validation for the R environment
• BillPetti/baseballr - A package written for R focused on baseball analysis. Currently in development.
• grantmcdermott/tinyplot - Lightweight extension of the base R graphics system
• talgalili/heatmaply - Interactive Heat Maps for R Using plotly
• Yunuuuu/ggalign - Integrative Composable Visualization Framework for ggplot2
• riatelab/cartography - Thematic Cartography for R
• const-ae/ggupset - Combination matrix axis for 'ggplot2' to create 'UpSet' plots
• tidyverse/duckplyr - A drop-in replacement for dplyr, powered by DuckDB for speed.
• daattali/ggExtra - 📊 Add marginal histograms to ggplot2, and more ggplot2 enhancements
• DillonHammill/DataEditR - An Interactive R Package for Viewing, Entering Filtering and Editing Data
• SymbolixAU/mapdeck - R interface to Deck.gl and Mapbox
• cols4all/cols4all-R - Colors for all (R package)
• walkerke/tigris - Download and use Census TIGER/Line shapefiles in R
• stemangiola/tidyHeatmap - Draw heatmap simply using a tidy data frame
• mages/googleVis - Interface between R and the Google Chart Tools
• nflverse/nflverse-pbp - builds play by play and player stats for nflverse/nflverse-data
• hafen/geofacet - R package for geographical faceting with ggplot2
• nathaneastwood/poorman - A poor man's dependency free grammar of data manipulation
• joshuaulrich/TTR - Technical analysis and other functions to construct technical trading rules with R
• taiyun/corrplot - A visual exploratory tool on correlation matrix
• vincentarelbundock/tinytable - Simple and Customizable Tables in R
• fastverse/fastverse - An Extensible Suite of High-Performance and Low-Dependency Packages for Statistical Computing and Data Manipulation in R
• jumpingrivers/datasauRus - R Package 📦 Containing the Datasaurus Dozen datasets :bar_chart:
• EmilHvitfeldt/ggpage - Creates Page Layout Visualizations in R 📄📄📄
• clauswilke/colorblindr - An R package to simulate colorblindness on R figures.
• hughjonesd/huxtable - An R package to create styled tables in multiple output formats, with a friendly, modern interface.
• georgevbsantiago/qsacnpj - Pacote que trata e organiza os dados do Cadastro Nacional da Pessoa Jurídica (CNPJ)
• neuhausi/canvasXpress - CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
• wviechtb/metafor - A meta-analysis package for R
• hughjonesd/ggmagnify - Create a magnified inset of part of a ggplot object
• FrankPortman/bayesAB - 🐢 bayesAB: Fast Bayesian Methods for A/B Testing
• bokeh/rbokeh - R interface to Bokeh http://hafen.github.io/rbokeh/ (archived)
• sjmgarnier/viridis - Colorblind-Friendly Color Maps for R
• NickCH-K/causalgraphs - R code for causal graph animations
• wilkox/ggfittext - 🔠 ggplot2 geoms to fit text into boxes
• jennybc/gapminder - Excerpt from the Gapminder data, as an R data package and in plain text delimited form
• loukesio/ltc-color-palettes - Artistic and nature-inspired colour palettes for R, on CRAN as 'ltc'. Curated for clarity and impact in scientific figures.
• moldach/vapoRwave - 📼👾🕹Vaporwave themes and color palettes for ggplot2💾👨‍🎤📺
• kosukeimai/fastLink - R package fastLink: Fast Probabilistic Record Linkage
• thomas-neitmann/ggcharts - Get You to Your Desired Plot Faster
• bergant/datamodelr - Data model diagrams in R
• r-spatial/leafgl - R package for fast web gl rendering for leaflet
• smartinsightsfromdata/rpivotTable - A R wrapper for the great library pivottable
• jakelawlor/PNWColors - A Pacific Northwest inspired R color palette package
• teunbrand/legendry - A 'ggplot2' extension that focusses on expanding the plotter's arsenal of guides, such as axes, legends and colour bars. It brings various improvements to existing guides by re-implementation, as well as adding novel guides.
• schochastics/graphlayouts - new layout algorithms for network visualizations in R
• R-CoderDotCom/calendR - Ready to print calendars with ggplot2
• ewenharrison/finalfit - Quickly create elegant regression results tables and plots when modelling in R
• stephenslab/susieR - R package for "sum of single effects" regression.
• exaexa/scattermore - very fast scatterplots for R
• ropensci/iheatmapr - Complex, interactive heatmaps in R
• ropensci/rnaturalearth - An R package to hold and facilitate interaction with natural earth map data :earth_africa:
• hafen/trelliscopejs - TrelliscopeJS R Package
• robjhyndman/tsfeatures - Time series features
• easystats/modelbased - :chart_with_upwards_trend: Estimate effects, contrasts and means based on statistical models
• leeper/margins - An R Port of Stata's 'margins' Command
• pharmaverse/rtables - Reporting tables with R
• erocoar/gghalves - ✂️ Easy half-half geoms in ggplot2
• alastairrushworth/inspectdf - 🛠️ 📊 Tools for Exploring and Comparing Data Frames
• bergant/finstr - :chart_with_upwards_trend: Financial statements in R
• covid19datahub/COVID19 - A worldwide epidemiological database for COVID-19 at fine-grained spatial resolution
• ggrothendieck/sqldf - Perform SQL Selects on R Data Frames
• rich-iannone/stationaRy - Get hourly meteorological data from one of thousands of global stations
• riatelab/mapsf - Thematic cartography with R
• rolkra/explore - R package that makes basic data exploration radically simple (interactive data exploration, reproducible data science)
• laresbernardo/lares - Analytics & Machine Learning R Sidekick
• SymbolixAU/googleway - R Package for accessing and plotting Google Maps
• kosukeimai/MatchIt - R package MatchIt
• rlbarter/superheat - An r package for generating beautiful and customizable heatmaps
• pewresearch/pewmethods - Pew Research Center Methods team R package of miscellaneous functions
• talgalili/d3heatmap - A D3.js-based heatmap htmlwidget for R
• kaz-yos/tableone - R package to create "Table 1", description of baseline characteristics with or without propensity score weighting
• philchalmers/mirt - Multidimensional item response theory
• gavinsimpson/gratia - ggplot-based graphics and useful functions for GAMs fitted using the mgcv package
• jamesotto852/ggdensity - An R package for interpretable visualizations of bivariate density estimates
• lbenz730/ncaahoopR - An R package for working with NCAA Basketball Play-by-Play Data
• bbolker/broom.mixed - tidy methods for mixed models in R
• ACCLAB/dabestr - Data Analysis with Bootstrap Estimation in R
• Hy4m/linkET - Everything is Linkable
• katiejolly/nationalparkcolors - R package for color themes inspired by national parks
• mayoverse/arsenal - An Arsenal of 'R' Functions for Large-Scale Statistical Summaries
• emitanaka/edibble - An R-package that encapsulate elements of experimental design for better planning, management, and workflow
• gergness/srvyr - R package to add 'dplyr'-like Syntax for Summary Statistics of Survey Data
• joshuaulrich/xts - Extensible time series class that provides uniform handling of many R time series classes by extending zoo.
• koenderks/rcityviews - rcityviews is a user-friendly R interface for creating stylized city maps using OpenStreetMap (www.openstreetmap.org) data, implemented as an R package and a Shiny web application.
• trafficonese/leaflet.extras - Extra functionality for leaflet R package.
• jthomasmock/gtExtras - A Collection of Helper Functions for the gt Package.
• thebioengineer/camcorder - Record plots generated during an R session and replay as a gif!
• wilkox/treemapify - 🌳 Draw treemaps in ggplot2
• r-spatial/mapedit - Interactive editing of spatial data in R
• dieghernan/tidyterra - Work with and visualize terra spatial objects using tidyverse methods and ggplot2.
• taylor-arnold/rpkg - A collection of R packages spanning natural language processing, statistical analysis, data visualization, and text analysis
• BlakeRMills/MoMAColors - Color Schemes based around artwork and the Museum of Modern Art.
• ateucher/rmapshaper - An R wrapper for the mapshaper javascript library
• hadley/reshape - An R package to flexible rearrange, reshape and aggregate data
• csdaw/ggprism - ggplot2 extension inspired by GraphPad Prism
• kcuilla/reactablefmtr - Streamlined Table Styling and Formatting for Reactable
• yihui/animation - A gallery of animations in statistics and utilities to create animations
• johannesbjork/LaCroixColoR - LaCroix Color Palettes for R.
• Torvaney/ggsoccer - Plot soccer event data in R/ggplot2
• nsgrantham/ggdark - Dark mode for ggplot2 themes
• davidhodge931/ggblanket - Publication-Quality 'ggplot2' Visualisation
• stan-dev/shinystan - shinystan R package and ShinyStan GUI
• briatte/ggnet - Network visualization with ggplot2
• Lchiffon/leafletCN - An R gallery for China and other geojson choropleth map in leaflet
• juba/explor - Interfaces for Multivariate Analysis in R
• psychbruce/bruceR - 📦 BRoadly Useful Convenient and Efficient R functions that BRing Users Concise and Elegant R data analyses.
• FantasyFootballAnalytics/ffanalytics - ffanalytics R package
• psychbruce/ChineseNames - 🀄 Chinese Name Database (1930-2008).
• lmullen/gender - Predict Gender from Names Using Historical Data
• mplatzer/BTYDplus - R package for Customer Behavior Analysis
• nacnudus/unpivotr - Unpivot complex and irregular data layouts in R
• leeper/slopegraph - Edward Tufte-Inspired Slopegraphs
• AliciaSchep/gglabeller - Shiny gadget for labeling points on ggplot
• openpharma/visR - A package to wrap functionality for plots, tables and diagrams adhering to graphical principles.
• abresler/fundManageR - An Investment Management toolkit for R. Because Excel is a threat to the global financial system.
• YuLab-SMU/ggimage - :art: Use Images in ggplot2
• dreamRs/billboarder - :bar_chart: R Htmlwidget for billboard.js
• ndphillips/VisualResume - An R package for creating a visual resume
• shosaco/vistime - Pretty timelines in R.
• vdeminstitute/vdemdata - An R package to load, explore and work with the most recent V-Dem (Varieties of Democracy) dataset.
• walkerke/mapgl - R interface to Mapbox GL JS v3 and Maplibre GL JS
• r-transit/tidytransit - R package for working with GTFS data
• christophergandrud/d3Network - Tools for creating D3 JavaScript network graphs from R.
• mattflor/chorddiag - R interface to D3 chord diagrams
• ShichenXie/scorecard - Scorecard Development in R, 评分卡
• elliottmorris/politicaldata - 🗳📊An R package for acquiring and analyzing political data — including polls, election results, legislator information, and demographic data.
• erdavis1/RoadColors - Plot US roads, coloring each by its designation (e.g. Street, Road, Avenue)
• nschiett/fishualize - The fishualize package provides color scales and silhouettes for plotting in R based on nature’s most stunning and colorful organisms: teleost fishes (with a few chondrichthyan cameos).
• edwindj/chunked - Chunkwise Text-file Processing for 'dplyr'
• jorvlan/raincloudplots - {package} The easy way to create raincloud plots
• JuliaStats/RDatasets.jl - Julia package for loading many of the data sets available in R
• ianmcook/tidyquery - Query R data frames with SQL
• rdboyes/forester - An R package for creating publication-ready forest plots.
• jonathancornelissen/highfrequency - The highfrequency package contains an extensive toolkit for the use of highfrequency financial data in R. It contains functionality to manage, clean and match highfrequency trades and quotes data. Furthermore, it enables users to: calculate easily various liquidity measures, estimate and forecast volatility, and investigate microstructure noise and intraday periodicity.
• phil8192/ob-analytics - R package intended for visualisation, analysis and reconstruction of limit order book data
• trr266/ExPanDaR - R Package for Interactive Panel Data Exploration
• oswaldosantos/ggsn - R package to add north symbols and scale bars to maps created with ggplot or ggmap
• talgalili/dendextend - Extending R's Dendrogram Functionality
• edwindj/daff - Diff, patch and merge for data.frames, see http://paulfitz.github.io/daff/
• zmeers/ggparliament - Simple parliament plots using ggplot2
• briatte/ggnetwork - Geoms to plot networks with ggplot2
• nrennie/messy - R package to make a data frame messy and untidy.
• ropensci/DataPackageR - An R package to enable reproducible data processing, packaging and sharing.
• strengejacke/sjmisc - Data transformation and utility functions for R
• ehrlinger/ggRandomForests - Graphical analysis of random forests with the randomForestSRC, randomForest, varPro and ggplot2 packages.
• jimmyday12/fitzRoy - A set of functions to easily access AFL data
• sjewo/cartogram - r package for cartogram creation
• timelyportfolio/d3r - d3.js helpers for R
• rivasiker/ggHoriPlot - A user-friendly, highly customizable R package for building horizon plots in ggplot2
• rubenarslan/codebook - Cook rmarkdown codebooks from metadata on R data frames
• sportsdataverse/hoopR - An R package to quickly obtain clean and tidy men's basketball play by play data.
• dreamRs/apexcharter - :bar_chart: R Htmlwidget for ApexCharts.js
• jolars/eulerr - Area-Proportional Euler and Venn Diagrams with Ellipses
• ropensci/tsbox - tsbox: Class-Agnostic Time Series in R
• JohnCoene/g2r - 📈 Grammar of graphics for interactive visualisations (archived)
• mbojan/alluvial - Alluvial diagrams for R
• schochastics/networkdata - R package containing several network datasets
• trr266/tidycovid19 - {tidycovid19}: An R Package to Download, Tidy and Visualize Covid-19 Related Data
• trulia/choroplethr - choroplethr simplifies the creation of choropleths (thematic maps) in R
• seankross/lego - :smiley: R data package featuring every Lego set from 1970 to 2015
• ropensci/osmplotr - Data visualisation using OpenStreetMap objects
• google/GeoexperimentsResearch - An open-source implementation of the geo experiment analysis methodology developed at Google. Disclaimer: This is not an official Google product. (archived)
• ardata-fr/mschart - :bar_chart: mschart: office charts from R
• 16EAGLE/moveVis - An R package for visualizing movement data (e.g. from GPS tracking) and synchronous environmental data (e.g. from remote sensing) as video animations.
• hadley/babynames - An R package containing US baby names from the SSA
• karoliskoncevicius/basetheme - Themes for base plotting system in R
• beanumber/etl - R package to facilitate ETL operations
• tidyverse/nycflights13 - An R data package containing all out-bound flights from NYC in 2013 + useful metdata
• XD-DENG/ECharts2Shiny - To insert interactive charts from ECharts into R Shiny applications (在R Shiny app中插入ECharts可交互图形)
• devOpifex/g2r - :chart_with_downwards_trend: Grammar of graphics for interactive visualisation using G2.js
• hrbrmstr/statebins - Alternative to choropleths of US States ala http://bit.ly/statebins
• cbailiss/pivottabler - Create Pivot Tables natively in R
• edgararuiz-zz/dbplot - Simplifies plotting of database and sparklyr data
• leifeld-lab/texreg - Conversion of R Regression Output to LaTeX or HTML Tables
• SMAPPNYU/smappR - R tools for analysis of Twitter data
• ujjwalkarn/xda - R package for exploratory data analysis
• delta-rho/trelliscope - Detailed Visualization of Large Complex Data in R
• riatelab/linemap - Create maps made of (ridge) lines
• njtierney/brolgar - BRowse Over Longitudinal Data Graphically and Analytically in R
• yihui/recharts - An R Interface to Apache ECharts (incubating)
• xfim/ggmcmc - Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference
• herbps10/reactor - Interactive notebooks for R

Networking and Distributed

Cloud and Infrastructure

• cloudyr/aws.s3 - Amazon Simple Storage Service (S3) API Client
• tidyverse/googledrive - Google Drive R API
• paws-r/paws - Paws, a package for Amazon Web Services in R
• rstudio/pins-r - Pin, discover, and share resources
• virtualstaticvoid/heroku-buildpack-r - Heroku buildpack for R - Makes deploying R on Heroku easy
• o2r-project/containerit - Package an R workspace and all dependencies as a Docker container
• tmobile/r-tensorflow-api - A small Docker container for using R and TensorFlow as an enterprise API
• karthik/holepunch - Make your R project Binder ready
• karthik/rdrop2 - Dropbox Interface from R
• rstudio/vetiver-r - Version, share, deploy, and monitor models
• ThinkR-open/dockerfiler - Easy Dockerfile Creation from R
• nanxstats/liftr - 🐳 Containerize R Markdown documents for continuous reproducibility
• maxheld83/ghactions - GitHub actions for R and accompanying R package (archived)
• pachadotdev/analogsea - Digital Ocean R client
• cloudyr/googleComputeEngineR - An R interface to the Google Cloud Compute API, for launching virtual machines
• ropensci/tic - Tasks Integrating Continuously: CI-Agnostic Workflow Definitions
• Kaggle/docker-rstats - Kaggle R docker image (archived)
• rstudio/rsconnect - Publish Shiny Applications, RMarkdown Documents, Jupyter Notebooks, Plumber APIs, and more
• mdneuzerling/lambdr - Run R containers on AWS Lambda
• richfitz/stevedore - :cloud::rowboat::whale::cloud: Docker client for R
• cloudyr/rmote - Utilities for running R on a remote server
• Azure/azureml-sdk-for-r - Azure Machine Learning SDK for R (archived)
• Azure/doAzureParallel - A R package that allows users to submit parallel workloads in Azure (archived)

User Interface

Terminal and Console UI

• r-lib/cli - Tools for making beautiful & useful command line interfaces
• r-lib/progress - Progress bar in your R terminal
• r-lib/crayon - 🖍️ R package for colored terminal output — now superseded by cli
• futureverse/progressr - 三 R package: An Inclusive, Unifying API for Progress Updates
• r-lib/asciicast - Turn R scripts into terminal screencasts
• gaborcsardi/prompt - Dynamic R prompt
• r-lib/pillar - Format columns with colour
• psolymos/pbapply - Adding progress bar to '*apply' functions in R
• coolbutuseless/emphatic - Highlighting R output in the console

Applications and End User Tools

• lcpmgh/colors - 科研绘图配色推荐器
• toddwschneider/ballr - Interactive NBA and NCAA Shot Charts with R and Shiny
• radiant-rstats/radiant - Business analytics using R and Shiny. The radiant app combines the menus from radiant.data, radiant.design, radiant.basics, radiant.model, and radiant.multivariate.
• swsoyee/2019-ncov-japan - 🦠 Interactive dashboard for real-time recording of COVID-19 outbreak in Japan
• swarm-lab/editR - A Rmarkdown editor with instant preview
• microsoft/TagAnomaly - Anomaly detection analysis and labeling tool, specifically for multiple time series (one time series per category) (archived)
• JohnCoene/coronavirus - 🦠 Novel Coronavirus (COVID-19) Tracker (archived)
• vnijs/radiant - Business analytics using R and Shiny
• renanxcortes/springerQuarantineBooksR - Download all books made available by Springer during the COVID-19 quarantine!
• Ronggui/RQDA - R-based Qualitative Data Analysis

Graphics and Media

Graphics and Rendering

• cutterkom/generativeart - Create Generative Art with R
• marcusvolz/mathart - Create mathematical art with R
• ryantimpe/brickr - 3D LEGO models and mosaics from images using R and #tidyverse
• wch/extrafont - Tools for using fonts in R graphics
• will-r-chase/aRt - Generative or data-driven artwork made with R
• gkaramanis/aRtist - Making art with R
• koenderks/aRtsy - aRtsy is an R package that implements algorithms for making generative art in a straightforward and standardized manner using 'ggplot2'.
• EmilHvitfeldt/prismatic - color manipulation R package Simply and Tidy
• thomasp85/farver - High Performance Colourspace Manipulation in R
• svalvaro/drawCell - R package to create cell pictures.
• nrennie/aRt - R package to create generative art.

Image and Video

• GuangchuangYu/hexSticker - :sparkles: Hexagon sticker in R
• ropensci/magick - Magic, madness, heaven, sin
• yonicd/carbonate - carbon.js for R
• sctyner/memer - A tidyverse compatible package for creating memes in R using the magick package.
• gtatters/Thermimage - R Package for working with radiometric thermal image files and data
• leeper/meme - Meme Generation in R

Security

Authentication and Authorization

• PaulC91/shinyauthr - R package with shiny authentication modules
• MarkEdmondson1234/googleAuthR - Google API Client Library for R. Easy authentication and help to build Google API R libraries with OAuth2. Shiny compatible.
• JohnCoene/firebase - Google FIrebase for shiny
• curso-r/auth0 - Authentication in shinyapps using Auth0 service
• r-lib/gargle - Infrastructure for calling Google APIs from R, including auth

Concurrency and Performance

Concurrency and Parallelism

• futureverse/future - :rocket: R package: future: Unified Parallel and Distributed Processing in R for Everyone
• r-lib/mirai - Minimalist Async Evaluation Framework for R
• futureverse/future.apply - :rocket: R package: future.apply - Apply Function to Elements in Parallel using Futures
• rstudio/promises - A promise library for R
• r-lib/coro - Coroutines for R
• mlr-org/batchtools - Tools for computation on batch systems
• wlandau/crew - A distributed worker launcher
• mschubert/clustermq - R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH
• futureverse/parallelly - ‖ R package: parallelly - Enhancing the 'parallel' Package
• vertica/ddR - Standard API for Distributed Data Structures in R

Testing and Quality

Testing

• r-lib/testthat - An R 📦 to make testing 😀
• tonyfischetti/assertr - Assertive programming for R analysis pipelines
• r-lib/covr - Test coverage reports for R
• ropensci/charlatan - Create fake data in R
• mllg/checkmate - Fast and versatile argument checks
• r-lib/waldo - Find differences between R objects
• trinker/wakefield - Generate random data sets
• markvanderloo/tinytest - A lightweight, no-dependency, but full-featured package for unit testing in R
• hadley/assertthat - User friendly assertions for R
• google/patrick - Parameterized testing in R is kind of cool!
• ThinkR-open/fakir - Create Fake Data in R for tutorials
• r-lib/rcmdcheck - Run R CMD check from R and collect the results

Utilities

Logging and Configuration

• elbersb/tidylog - Tidylog provides feedback about dplyr and tidyr operations. It provides wrapper functions for the most common functions, such as filter, mutate, select, and group_by, and provides detailed output for joins.
• daroczig/logger - A lightweight, modern and flexible, log4j and futile.logger inspired logging utility for R
• rstudio/config - config package for R
• HenrikBengtsson/startup - :wrench: R package: startup - Friendly R Startup Configuration
• zatonovo/futile.logger - A logging package in R similar to log4j

Text Processing

• rstudio/rmarkdown - Dynamic Documents for R
• yihui/knitr - A general-purpose tool for dynamic report generation in R
• rstudio/blogdown - Create Blogs and Websites with R Markdown
• mitchelloharawild/vitae - R Markdown Résumés and CVs
• rstudio/pagedown - Paginate the HTML Output of R Markdown with CSS for Print
• ramnathv/slidify - Generate reproducible html5 slides from R markdown
• tidyverse/glue - Glue strings to data in R. Small, fast, dependency free interpreted string literals.
• davidgohel/officer - :cop: officer: office documents from R
• crsh/papaja - papaja (Preparing APA Journal Articles) is an R package that provides document formats to produce complete APA manuscripts from RMarkdown-files (PDF and Word documents) and helper functions that facilitate reporting statistics, tables, and plots.
• tidyverse/stringr - A fresh approach to string manipulation in R
• nstrayer/datadrivencv - R package for building customizable CVs from spreadsheets
• pzhaonet/mindr - an R package which converts markdown files (.md, .Rmd) into mindmaps (brainstorms)
• tribalxg/redoc - Reversible Reproducible Documents
• gadenbuie/regexplain - 🔍 An RStudio addin slash regex utility belt
• rstudio/tufte - Tufte Styles for R Markdown Documents
• rstudio/distill - Distill for R Markdown
• hadley/emo - Easily insert emoji into R and RMarkdown
• markvanderloo/stringdist - String distance functions for R
• benmarwick/wordcountaddin - Word counts and readability statistics in R markdown documents
• r-lib/rex - Friendly regular expressions for R.
• Rapporter/pander - An R Pandoc Writer: Convert arbitrary R objects into markdown
• yihui/litedown - A lightweight version of R Markdown (without using Pandoc or knitr)
• VerbalExpressions/RVerbalExpressions - :speech_balloon: Create regular expressions easily
• trinker/textclean - Tools for cleaning and normalizing text data
• pzhaonet/bookdownplus - The easiest way to use R package bookdown for writing varied types of books and documents
• davidgohel/ReporteRs - Note that ReporteRs has been removed from CRAN the 16th of July 2018 and is not maintained anymore. please migrate to officer. (archived)
• brodieG/diffobj - Compare R Objects with a Diff
• edwindj/whisker - {{mustache}} for R
• r-for-educators/flair - decorate your R code
• gadenbuie/epoxy - Extra-strength glue engines for R Markdown, Quarto, and Shiny
• GuangchuangYu/badger - Badge for R Package
• stefano-meschiari/latex2exp - Use LaTeX in R graphics.
• Appsilon/shiny.i18n - Shiny applications internationalization made easy
• quarto-dev/quarto-r - R interface to quarto-cli
• Tazinho/snakecase - 🐍🐍🐍 A systematic approach to parse strings and automate the conversion to snake_case, UpperCamelCase or any other case.
• paleolimbot/rbbt - R Interface to the Better BiBTex Zotero Connector
• MangoTheCat/rmdshower - R Markdown template for shower
• line/conflr - Post R Markdown documents to Confluence (archived)
• quanteda/readtext - an R package for reading text files
• ropensci/RefManageR - R package RefManageR
• yihui/printr - Some (magical) printing methods for knitr
• ropensci/ezknitr - Avoid the typical working directory pain when using 'knitr'
• adletaw/captioner - an R package for generating figure/table numbers and captions, especially for Rmd docs (archived)
• Ironholds/pystr - Python String Methods in R.
• trinker/reports - An R package to assist in the workflow of writing academic articles and other reports

Files and Operating System

• r-lib/here - A simpler way to find your files
• r-lib/fs - Provide cross platform file operations based on libuv.
• r-lib/callr - Call R from R
• r-lib/processx - Execute and Control Subprocesses from R
• ropensci/piggyback - :package: for using large(r) data files on GitHub
• mdlincoln/clipr - R functions for reading and writing from the system clipboard
• r-lib/rprojroot - Finding files in project subdirectories

Automation and Scripting

• workflowr/workflowr - Organize your project into a research website
• tidyverse/reprex - Render bits of R code for sharing, e.g., on GitHub or StackOverflow.
• benmarwick/rrtools - rrtools: Tools for Writing Reproducible Research in R
• KentonWhite/ProjectTemplate - A template utility for R projects that provides a skeletal project.
• Pakillo/grateful - Facilitate citation of R packages
• ropensci/git2r - R bindings to the libgit2 library
• Pakillo/template - A template for data analysis projects structured as R packages (or not)
• r-lib/gert - Simple git client for R
• joshkatz/r-script - A simple little module for passing data from NodeJS to R (and back again).
• ropensci/tarchetypes - Archetypes for targets and pipelines
• globeandmail/startr - A template for data journalism in R
• emilyriederer/projmgr - R-based project management tools
• lockedata/starters - R Package 📦 for initializing projects for various R activities :nut_and_bolt:
• vimc/orderly1 - :hospital::ambulance: Lightweight Reproducible Reporting for R
• cboettig/template - :package: A template for my research projects, based on the R package structure

General Purpose Libraries

• tidyverse/purrr - A functional programming toolkit for R
• tidyverse/magrittr - Improve the readability of R code with the pipe
• r-lib/rlang - Low-level API for programming with R
• RConsortium/S7 - S7: a new OO system for R
• r-lib/R6 - Encapsulated object-oriented programming for R
• vincentarelbundock/countrycode - R package: Convert country names and country codes. Assigns region descriptors.
• r-lib/zeallot - Variable assignment with zeal! (or multiple, unpacking, and destructuring assignment in R)
• r-lib/conflicted - An alternative conflict resolution strategy for R
• rticulate/import - An Import Mechanism For R
• zatonovo/lambda.r - Functional programming in R
• gluc/data.tree - General Purpose Hierarchical Data Structure for R
• r-quantities/units - Measurement units for R
• renkun-ken/rlist - A Toolbox for Non-Tabular Data Manipulation
• kbroman/broman - R/broman: A package with Karl Broman's personal R code
• r-lib/withr - Methods For Temporarily Modifying Global State
• renkun-ken/pipeR - Multi-Paradigm Pipeline Implementation
• yihui/xfun - Miscellaneous R functions
• hughjonesd/santoku - A versatile cutting tool for R
• tomaztk/Useless_R_functions - Useless R Functions. That's it
• WinVector/wrapr - Wrap R for Sweet R Code
• r-lib/ellipsis - Tools for Working with ...
• ColinFay/attempt - Tools for defensive programming in R

Science and Math

Mathematics

• google/CausalImpact - An R package for causal inference in time series
• paul-buerkner/brms - brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan
• robjhyndman/forecast - Forecasting Functions for Time Series and Linear Models
• easystats/easystats - :milky_way: The R easystats-project
• easystats/performance - :muscle: Models' quality and performance metrics (R2, ICC, LOO, AIC, BF, ...)
• stan-dev/rstan - RStan, the R interface to Stan
• tidymodels/infer - An R package for tidyverse-friendly statistical inference
• mjskay/tidybayes - Bayesian analysis + tidy data + geoms (R package)
• easystats/report - :scroll: :tada: Automated reporting of objects in R
• vincentarelbundock/marginaleffects - R package to compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 100 classes of statistical and ML models. Conduct linear and non-linear hypothesis tests, or equivalence tests. Calculate uncertainty estimates using the delta method, bootstrapping, or simulation-based inference
• igraph/rigraph - igraph R package
• greta-dev/greta - simple and scalable statistical modelling in R
• easystats/bayestestR - :ghost: Utilities for analyzing Bayesian models and posterior distributions
• tidymodels/corrr - Explore correlations in R
• thomasp85/tidygraph - A tidy API for graph manipulation
• yrosseel/lavaan - an R package for structural equation modeling and more
• easystats/parameters - :bar_chart: Computation and processing of models' parameters
• kassambara/rstatix - Pipe-friendly Framework for Basic Statistical Tests in R
• r-causal/ggdag - :arrow_lower_left: :arrow_lower_right: An R package for working with causal directed acyclic graphs (DAGs)
• easystats/correlation - :link: Methods for Correlation Analysis
• therneau/survival - Survival package for R
• easystats/insight - :crystal_ball: Easy access to model information for various model objects
• RamiKrispin/TSstudio - Tools for time series analysis and forecasting
• stan-dev/rstanarm - rstanarm R package for Bayesian applied regression modeling
• tidyverse/modelr - Helper functions for modelling
• easystats/effectsize - :dragon: Compute and work with indices of effect size and standardized parameters
• dirkschumacher/ompr - R package to model Mixed Integer Linear Programs
• cvxgrp/CVXR - An R modeling language for convex optimization problems.
• HenrikBengtsson/matrixStats - R package: Methods that Apply to Rows and Columns of Matrices (and to Vectors)
• spatstat/spatstat - Umbrella package of the 'spatstat' family................
• harrelfe/rms - Regression Modeling Strategies
• MicheleNuijten/statcheck - A spellchecker for statistics
• strengejacke/sjstats - Effect size measures and significance tests
• CausalInference/gfoRmula - The gfoRmula package implements the parametric g-formula in R. The parametric g-formula (Robins, 1986) uses longitudinal data with time-varying treatments and confounders to estimate the risk or mean of an outcome under hypothetical treatment strategies specified by the user.
• nicholasjclark/mvgam - {mvgam} R 📦 to fit Dynamic Bayesian Generalized Additive Models for multivariate modeling and forecasting
• jslefche/piecewiseSEM - Piecewise Structural Equation Modeling in R
• privefl/bigstatsr - R package for statistical tools with big matrices stored on disk.
• SteffenMoritz/imputeTS - CRAN R Package: Time Series Missing Value Imputation
• stan-dev/posterior - The posterior R package
• jacob-long/jtools - Tools for summarizing/visualizing regressions and other helpful stuff
• mkearney/tidyversity - 🎓 Tidy tools for academics
• stan-dev/cmdstanr - CmdStanR: the R interface to CmdStan
• openpharma/mmrm - Mixed Models for Repeated Measures (MMRM) in R.
• neuropsychology/psycho.R - An R package for experimental psychologists
• stan-dev/loo - loo R package for approximate leave-one-out cross-validation (LOO-CV) and Pareto smoothed importance sampling (PSIS)
• renozao/NMF - NMF: A Flexible R package for Nonnegative Matrix Factorization
• drostlab/philentropy - Information Theory and Distance Quantification with R
• SciML/diffeqr - Solving differential equations in R using DifferentialEquations.jl and the SciML Scientific Machine Learning ecosystem
• Veronica0206/nlpsem - R package for analyzing nonlinear longitudinal processes in the structural equation modeling framework
• rkillick/changepoint - A place for the development version of the changepoint package on CRAN.
• xrobin/pROC - Display and analyze ROC curves in R
• jacob-long/interactions - A comprehensive, user-friendly toolkit for visualizing and analyzing statistical interactions. A spinoff from the jtools package.
• richarddmorey/BayesFactor - BayesFactor R package for Bayesian data analysis with common statistical models.
• singmann/afex - Analysis of Factorial EXperiments (R package)
• matloff/regtools - Various tools for linear, nonlinear and nonparametric regression.
• christophsax/seasonal - R interface to X-13ARIMA-SEATS
• ZeBang/tensorTS - R package for autoregressive, reduced-rank, and factor models in time series.
• robjhyndman/anomalous-acm - Anomalous time series package for R (ACM)
• earowang/hts - Hierarchical and Grouped Time Series
• jthaman/ciTools - An R package for quick uncertainty intervals
• r-lib/rray - Array helpers

Scientific Computing

• satijalab/seurat - R toolkit for single cell genomics
• r-spatial/sf - Simple Features for R
• YuLab-SMU/ggtree - :christmas_tree:Visualization and annotation of phylogenetic trees
• sqjin/CellChat - R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data (archived)
• r-spatial/rgee - Google Earth Engine for R
• r-lidar/lidR - Airborne LiDAR data manipulation and visualisation for forestry application
• jinworks/CellChat - R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
• immunogenomics/harmony - Fast, sensitive and accurate integration of single-cell data with Harmony
• massimoaria/bibliometrix - An R-tool for comprehensive science mapping analysis. A package for quantitative research in scientometrics and bibliometrics.
• joey711/phyloseq - phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
• r-spatial/stars - Spatiotemporal Arrays, Raster and Vector Data Cubes
• wilkox/gggenes - ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
• chris-mcginnis-ucsf/DoubletFinder - R package for detecting doublets in single-cell RNA sequencing data
• MRCIEU/TwoSampleMR - R package for performing 2-sample MR using IEU OpenGWAS database
• vegandevs/vegan - R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
• e-sensing/sits - Satellite image time series in R
• PoisonAlien/maftools - Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
• GreenleafLab/ArchR - ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
• MarioniLab/miloR - R package implementation of Milo for testing for differential abundance in KNN graphs
• ropensci/stplanr - Sustainable transport planning with R
• welch-lab/liger - R package for integrating and analyzing multiple single-cell datasets
• stuart-lab/signac - R toolkit for the analysis of single-cell chromatin data
• xia-lab/MetaboAnalystR - R package for MetaboAnalyst
• junjunlab/scRNAtoolVis - Useful functions to make your scRNA-seq plot more cool!
• luukvdmeer/sfnetworks - Tidy Geospatial Networks in R
• bernatgel/karyoploteR - karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
• bkelly-lab/ReplicationCrisis - Code for "Is There a Replication Crisis in Finance" by Jensen, Kelly and Pedersen (2023)
• BorchLab/scRepertoire - A toolkit for single-cell immune profiling
• openair-project/openair - 🧭 Open source tools for air quality data analysis
• BioinformaticsFMRP/TCGAbiolinks - TCGAbiolinks
• TullyMonster/MendelRookie - 新手友好的孟德尔随机化项目
• constantAmateur/SoupX - R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
• immunomind/immunarch - 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design
• xiaolei-lab/rMVP - :postbox: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study
• pwwang/scplotter - scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial data in an easy and efficient way.
• pharmaverse/admiral - ADaM in R Asset Library
• microbiome/microbiome - microbiome R package
• mengxu98/scop - An R package for single-cell and spatial omics analysis, integration, interpretation, and visualization.
• samuel-marsh/scCustomize - R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
• saezlab/decoupleR - R package to infer biological activities from omics data using a collection of methods.
• cailab-tamu/scTenifoldKnk - R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
• GenomicSEM/GenomicSEM - R-package for structural equation modeling based on GWAS summary data
• bleutner/RStoolbox - Remote Sensing Data Analysis in R 🛰
• IOBR/IOBR - IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.io/IOBR/
• ChiLiubio/microeco - An R package for downstream data analysis of microbiome omics data
• OpenDroneMap/FIELDimageR - FIELDimageR: A R package to analyze orthomosaic images from agricultural field trials. This package is a compilation of functions to analyze pos-mosaicking images from research fields, and allows to: crop the image; remove soil effect; build vegetation indices; rotate the image; build the plot shapefile; extract information for each plot; and evaluate stand count, canopy percentage, and plant height.
• satijalab/sctransform - R package for modeling single cell UMI expression data using regularized negative binomial regression
• mixOmics-org/mixOmics - Development repository for the Bioconductor package 'mixOmics '
• knausb/vcfR - Tools to work with variant call format files
• al2na/methylKit - R package for DNA methylation analysis
• RGLab/MAST - Tools and methods for analysis of single cell assay data in R
• r-spatialecology/landscapemetrics - Landscape Metrics for Categorical Map Patterns 🗺️ in R
• jackwasey/icd - New maintainer/owner needed Fast ICD-10 and ICD-9 comorbidities, decoding and validation in R. NB use main instead of master for default branch.
• GoekeLab/bambu - Reference-guided transcript discovery and quantification for long read RNA-Seq data
• sdmTMB/sdmTMB - An R package for spatial and spatiotemporal GLMMs with TMB
• PecanProject/pecan - The Predictive Ecosystem Analyzer (PEcAn) is an integrated ecological bioinformatics toolbox.
• noriakis/ggkegg - Analyzing and visualizing KEGG information using the grammar of graphics
• enblacar/SCpubr - Generate high quality, publication ready visualizations for single cell transcriptomics data.
• junjunlab/GseaVis - An implement R package to visualize GSEA results
• sneumann/xcms - This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
• r-simmer/simmer - Discrete-Event Simulation for R
• emanuelhuber/RGPR - Ground-penetrating radar (GPR) data processing and visualisation: a free and open-source software package (R language)
• kharchenkolab/conos - R package for the joint analysis of multiple single-cell RNA-seq datasets
• iSEE/iSEE - R/shiny interface for interactive visualization of data in SummarizedExperiment objects
• omarwagih/ggseqlogo - Publication-quality sequence logos in R
• jotech/gapseq - Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
• griffithlab/GenVisR - Genome data visualizations
• privefl/bigsnpr - R package for the analysis of massive SNP arrays.
• ropensci/biomartr - Genomic Data Retrieval with R
• r-spatial/qgisprocess - R package to use QGIS processing algorithms
• KlausVigo/phangorn - Phylogenetic analysis in R
• chr1swallace/coloc - Repo for the R package coloc
• theislab/zellkonverter - Conversion between scRNA-seq objects
• cafferychen777/ggpicrust2 - Make Picrust2 Output Analysis and Visualization Easier
• egeulgen/pathfindR - pathfindR: Enrichment Analysis Utilizing Active Subnetworks
• SSSYDYSSS/TransProR - Analysis and visualization of multi-omics data. In ongoing development: multi-modal fusion, sparse learning, and spatio-temporal effects...
• SingleR-inc/SingleR - Clone of the Bioconductor repository for the SingleR package.
• VanLoo-lab/ascat - ASCAT R package
• thibautjombart/adegenet - adegenet: a R package for the multivariate analysis of genetic markers
• mikejohnson51/climateR - An R 📦 for getting point and gridded climate data by AOI
• rspatial/geodata - download geographic data
• scverse/anndataR - AnnData interoperability in R
• cwatson/brainGraph - Graph theory analysis of brain MRI data
• yiluheihei/microbiomeMarker - R package for microbiome biomarker discovery
• GreenleafLab/chromVAR - chromatin Variability Across Regions (of the genome!)
• ropensci/osmextract - Download and import OpenStreetMap data from Geofabrik and other providers
• YuLab-SMU/MicrobiotaProcess - :microbe: A comprehensive R package for deep mining microbiome
• velocyto-team/velocyto.R - RNA velocity estimation in R
• PoisonAlien/trackplot - Generate IGV style locus tracks from bigWig files in R
• opengeos/whiteboxR - WhiteboxTools R Frontend
• carlos-alberto-silva/rGEDI - rGEDI: An R Package for NASA's Global Ecosystem Dynamics Investigation (GEDI) Data Visualization and Processing.
• sachit27/greenR - greenR is an R package that enables the quantification, analysis, and visualization of urban greenness within city networks. It leverages data from OpenStreetMap (www.openstreetmap.org) and is implemented as both an R package and a Shiny web application for user-friendly interaction.
• r-spatial/RQGIS - RQGIS - integrating R with QGIS (archived)
• ropensci/webchem - Chemical Information from the Web
• jbisanz/qiime2R - Import qiime2 artifacts to R
• theislab/kBET - An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
• hms-dbmi/scde - R package for analyzing single-cell RNA-seq data
• stefpeschel/NetCoMi - Network construction, analysis, and comparison for microbial compositional data
• epigen/MrBiomics - MrBiomics: Composable modules and recipes automate bioinformatics for multi-omics analyses
• saezlab/OmnipathR - R client for the OmniPath web service
• stephenturner/qqman - An R package for creating Q-Q and manhattan plots from GWAS results
• metrumresearchgroup/mrgsolve - Simulate from ODE-based population PK/PD and QSP models in R
• hemberg-lab/scRNA.seq.datasets - Collection of public scRNA-Seq datasets used by our group
• jamesjiadazhan/dietaryindex - R Package for Calculating Healthy Eating Index-2020 (HEI2020), Alternative Healthy Eating Index (AHEI), Dietary Approaches to Stop Hypertension (DASH), Mediterranean Diet (MED), Dietary Inflammation Index (DII), and Planetary Health Diet Index from the EAT-Lancet Commission (PHDI) for the NHANES, ASA24, DHQ, and other dietary assessments
• stephenturner/annotables - R data package for annotating/converting Gene IDs
• ranghetti/sen2r - Find, Download and Process Sentinel-2 Data
• 10XGenomics/loupeR - Convert Seurat objects to 10x Genomics Loupe files.
• rich-iannone/splitr - Use the HYSPLIT model from inside R and do more with it
• saezlab/dorothea - R package to access DoRothEA's regulons
• ShixiangWang/sigminer - 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
• dankelley/oce - R package for oceanographic processing
• ropensci/MODIStsp - An "R" package for automatic download and preprocessing of MODIS Land Products Time Series
• rspatial/raster - R raster package https://rspatial.github.io/raster/reference/raster-package.html
• PheWAS/PheWAS - The PheWAS R package
• CornellLabofOrnithology/auk - Working with eBird data in R
• MRCIEU/gwasglue - Linking GWAS data to analytical tools in R
• eliocamp/metR - Tools for Easier Analysis of Meteorological Fields
• PaulingLiu/ROGUE - Assessing the purity of single cell population
• ayueme/easyTCGA - 📦R包：Make TCGA download and prepare easy!
• royfrancis/pophelper - An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
• wadpac/GGIR - Code corresponding to R package GGIR
• grunwaldlab/metacoder - Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
• alyssafrazee/ballgown - Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
• ANTsX/ANTsR - R interface to the ANTs biomedical image processing library
• lindbrook/cholera - R Package for Analyzing John Snow's 1854 Cholera Map
• lgatto/MSnbase - Base Classes and Functions for Mass Spectrometry and Proteomics
• prioritizr/prioritizr - Systematic conservation prioritization in R
• walkerke/crsuggest - Get appropriate CRS suggestions for your spatial data in R
• R-ArcGIS/arcgisbinding - Bridge library to connect ArcGIS and R, including arcgisbinding R library.
• rezakj/iCellR - iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. It supports a variety of single-cell technologies, including scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq, and Spatial Transcriptomics (ST).
• genome/sciclone - An R package for inferring the subclonal architecture of tumors
• davebraze/FDBeye - R tools for eyetracker workflows.
• ncborcherding/scRepertoire - A toolkit for single-cell immune profiling

Other

• briatte/awesome-network-analysis - A curated list of awesome network analysis resources.
• johnmyleswhite/ML_for_Hackers - Code accompanying the book "Machine Learning for Hackers"
• thomasp85/patchwork - The Composer of ggplots
• genomicsclass/labs - Rmd source files for the HarvardX series PH525x
• toddwschneider/nyc-taxi-data - Import public NYC taxi and for-hire vehicle (Uber, Lyft) trip data into a PostgreSQL or ClickHouse database
• thomasp85/gganimate - A Grammar of Animated Graphics
• szilard/benchm-ml - A minimal benchmark for scalability, speed and accuracy of commonly used open source implementations (R packages, Python scikit-learn, H2O, xgboost, Spark MLlib etc.) of the top machine learning algorithms for binary classification (random forests, gradient boosted trees, deep neural networks etc.).
• rmcelreath/stat_rethinking_2024
• zonination/investing - Investing Returns on the Market as a Whole
• hadley/stats337 - Readings in applied data science
• jokergoo/ComplexHeatmap - Make Complex Heatmaps
• fossasia/tofsims
• rstudio/plumber - Turn your R code into a web API.
• jrnold/ggthemes - Additional themes, scales, and geoms for ggplot2
• kassambara/ggpubr - 'ggplot2' Based Publication Ready Plots
• slowkow/ggrepel - :round_pushpin: Repel overlapping text labels away from each other in your ggplot2 figures.
• YuLab-SMU/clusterProfiler - :bar_chart: A universal enrichment tool for interpreting omics data
• andrewgbruce/statistics-for-data-scientists - Code and data associated with the book "Statistics for Data Scientists: 50 Essential Concepts"
• daattali/advanced-shiny - 🤹 Shiny tips & tricks for improving your apps and solving common problems
• rstudio/tinytex - A lightweight, cross-platform, portable, and easy-to-maintain LaTeX distribution based on TeX Live
• rstudio/pointblank - Data quality assessment and metadata reporting for data frames and database tables
• allisonhorst/palmerpenguins - A great intro dataset for data exploration & visualization (alternative to iris).
• gesiscss/awesome-computational-social-science - A list of awesome resources for Computational Social Science
• thomasp85/ggforce - Accelerating ggplot2
• johnmyleswhite/BanditsBook - Code for my book on Multi-Armed Bandit Algorithms
• business-science/tidyquant - Bringing financial analysis to the tidyverse
• jmzeng1314/GEO
• davidgohel/ggiraph - make 'ggplot' graphics interactive
• daattali/addinslist - 📜 Discover and install useful RStudio addins
• hyu020/MoRad
• google/rappor - RAPPOR: Privacy-Preserving Reporting Algorithms (archived)
• zonination/perceptions - Perceptions of Probability and Numbers
• SiatBioInf/panCTC
• tidymodels/tidymodels - Easily install and load the tidymodels packages
• Mcompetitions/M4-methods - Data, Benchmarks, and methods submitted to the M4 forecasting competition
• rgeirhos/texture-vs-shape - Pre-trained models, data, code & materials from the paper "ImageNet-trained CNNs are biased towards texture; increasing shape bias improves accuracy and robustness" (ICLR 2019 Oral)
• tidyverse/lubridate - Make working with dates in R just that little bit easier
• thackl/gggenomes - A grammar of graphics for comparative genomics
• selva86/datasets - A collection of datasets of ML problem solving
• natverse/malecns - Access to the latest 'Janelia FlyEM' datasets
• erikgahner/PolData - A dataset with political datasets
• opencpu/opencpu - OpenCPU system for embedded scientific computation and reproducible research
• wilkelab/cowplot - cowplot: Streamlined Plot Theme and Plot Annotations for ggplot2
• nanxstats/ggsci - 🦄 Scientific journal and sci-fi themed color palettes for ggplot2
• futureverse/furrr - Apply Mapping Functions in Parallel using Futures
• haozhu233/kableExtra - Construct Complex Table with knitr::kable() + pipe.
• giocomai/ganttrify - Create beautiful Gantt charts with ggplot2
• JohsEnevoldsen/literature-clock - Clock using time quotes from the literature, based on the work of Jaap Meijers
• jbengler/tidyplots - Tidy Plots for Scientific Papers
• dgrtwo/fuzzyjoin - Join tables together on inexact matching
• ModelOriented/DrWhy - DrWhy is the collection of tools for eXplainable AI (XAI). It's based on shared principles and simple grammar for exploration, explanation and visualisation of predictive models.
• zhanghao-njmu/SCP - An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
• broadinstitute/infercnv - Inferring CNV from Single-Cell RNA-Seq
• saeyslab/nichenetr - NicheNet: predict active ligand-target links between interacting cells
• teunbrand/ggh4x - ggplot extension: options for tailored facets, multiple colourscales and miscellaneous
• Misterursw/interactive_modify_figures_from_python
• njtierney/naniar - Tidy data structures, summaries, and visualisations for missing data
• wilkelab/ggtext - Improved text rendering support for ggplot2
• tidymodels/parsnip - A tidy unified interface to models
• AllanCameron/geomtextpath - Create curved text paths in ggplot2
• tidyverse/multidplyr - A dplyr backend that partitions a data frame over multiple processes
• YinLiLin/CMplot - 📊 Circular and Rectangular Manhattan Plot
• TheEconomist/covid-19-excess-deaths-tracker - Source code and data for The Economist's covid-19 excess deaths tracker
• business-science/timetk - Time series analysis in the tidyverse
• datalorax/equatiomatic - Convert models to LaTeX equations
• const-ae/ggsignif - Easily add significance brackets to your ggplots
• strengejacke/ggeffects - Estimated Marginal Means and Marginal Effects from Regression Models for ggplot2
• tidyverts/fable - Tidy time series forecasting
• Pecners/rayshader_portraits
• business-science/modeltime - Modeltime unlocks time series forecast models and machine learning in one framework
• marcusvolz/strava - Create artistic visualisations with your exercise data
• oncologylab/craftgrn - Combined RNA and ATAC Footprint Training of Gene Regulatory Network
• davidsjoberg/ggbump - A geom for ggplot to create bump plots
• Azure/Azure-TDSP-ProjectTemplate - TDSP: Data science project template repository with standardized directory structure and document templates to support efficient project execution and collaboration. (archived)
• kassambara/survminer - Survival Analysis and Visualization
• rstudio/blastula - Easily send great-looking HTML email messages from R
• eclarke/ggbeeswarm - Column scatter / beeswarm-style plots in ggplot2
• CheyneyComputerScience/CREMA-D - Crowd Sourced Emotional Multimodal Actors Dataset (CREMA-D)
• benjjneb/dada2 - Accurate sample inference from amplicon data with single nucleotide resolution
• omnideconv/immunedeconv - A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
• posit-dev/skills - A collection of Claude Skills from Posit
• yutannihilation/gghighlight - Highlight points and lines in ggplot2
• jiayiliujiayi/2020nCov_individual_archives - "Every individual matters. Every individual has a role to play." This is a repository that archives the individual stories during the COVID19 pandemic. 备份普通人在疫情期间的记录。（持续翻译 & 更新中）
• rstudio/hex-stickers - RStudio hex stickers
• amices/mice - Multivariate Imputation by Chained Equations
• calligross/ggthemeassist - A RStudio addin for ggplot2 theme tweaking
• nmaggiulli/of-dollars-and-data - Repo for ofdollarsanddata.com blog
• smorabit/hdWGCNA - High dimensional weighted gene co-expression network analysis
• systematicinvestor/SIT - Systematic Investor Toolkit
• walmes/Tikz - Galley of Tikz drawings.
• thelovelab/DESeq2 - Differential expression of RNA-seq data using the Negative Binomial
• markfairbanks/tidytable - Tidy interface to 'data.table'
• kevinblighe/EnhancedVolcano - Publication-ready volcano plots with enhanced colouring and labeling
• cellgeni/sceasy - A package to help convert different single-cell data formats to each other
• cole-trapnell-lab/monocle3
• lrberge/fixest - Fixed-effects estimations
• alserglab/fgsea - Fast Gene Set Enrichment Analysis
• TheEconomist/covid-19-the-economist-global-excess-deaths-model - The Economist's model to estimate excess deaths to the covid-19 pandemic
• fbreitwieser/pavian - 🌈 Interactive analysis of metagenomics data
• gadenbuie/xaringanthemer - 😎 Give your xaringan slides some style
• SocialCatalystLab/ape-papers - Can policy evaluation be automated? Or inevitably create hallucinated AI slop? We are trying to find out.
• nflverse/nflverse-data - Automated nflverse data repository
• wleepang/DesktopDeployR - A framework for deploying self-contained R-based applications to the desktop
• JGCRI/gcam-core - GCAM -- The Global Change Analysis Model
• bioFAM/MOFA2 - Multi-Omics Factor Analysis
• GuangchuangYu/nCov2019 - query stats of infected coronavirus cases
• manlius/muxViz - Analysis and Visualization of Interconnected Multilayer Networks
• rvlenth/emmeans - Estimated marginal means
• wilkelab/ggridges - Ridgeline plots in ggplot2
• bcallaway11/did - Difference in Differences with Multiple Periods, website: https://bcallaway11.github.io/did
• moodymudskipper/flow - View and Browse Code Using Flow Diagrams
• Derek-Jones/ESEUR-code-data - Code and data used to create the examples in "Evidence-based Software Engineering based on the publicly available data"
• softdorothy/GliderPRO - Sources for the Macintosh game, Glider PRO, written by John Calhoun and published by Casady & Green Inc.
• RinteRface/shinyMobile - shiny API for Framework7 (IOS/android)
• jeffreybreen/twitter-sentiment-analysis-tutorial-201107 - Code to reproduce the simple sentiment analysis from my presentation
• crsh/citr - RStudio Addin to Insert Markdown Citations from a BibTeX file or Zotero
• jespermaag/gganatogram - Create anatograms using ggplot2
• MattCowgill/ggannotate - Interactively annotate ggplots
• tidymodels/yardstick - Tidy methods for measuring model performance
• thomasp85/tweenr - Interpolate your data
• ricardo-bion/ggtech - ggplot2 tech themes, scales, and geoms
• kpatel427/YouTubeTutorials
• giotto-suite/Giotto - Spatial omics analysis toolbox
• trevorld/ggpattern - ggplot geoms with pattern fills
• junjunlab/ClusterGVis - One-step to Cluster and Visualize Gene Expression Matrix
• paleolimbot/ggspatial - Enhancing spatial visualization in ggplot2
• glmmTMB/glmmTMB - glmmTMB
• kassambara/factoextra - Extract and Visualize the Results of Multivariate Data Analyses
• johnmyleswhite/MLNotes - Very concise notes on machine learning and statistics.
• kevinblighe/PCAtools - PCAtools: everything Principal Components Analysis
• nflverse/nfldata - NFL Data (by Lee Sharpe)
• davidgohel/officedown
• satijalab/seurat-wrappers - Community-provided extensions to Seurat
• bcaffo/Caffo-Coursera - A repository of my Coursera latex code and notes
• primaryobjects/voice-gender - Gender recognition by voice and speech analysis
• jtlandis/ggside - ggplot2 extension allowing for plotting various geometries as side panels using the ggplot2 API
• ricardo-bion/ggradar - radar charts with ggplot2
• h2oai/db-benchmark - reproducible benchmark of database-like ops
• jhelvy/splitKbCompare - An interactive tool for comparing layouts of different split mechanical keyboards
• kstreet13/slingshot - Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
• broadinstitute/ssGSEA2.0 - Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
• ropensci/software-review - rOpenSci Software Peer Review.
• tidymodels/tune - Tools for tidy parameter tuning
• bnosac/taskscheduleR - Schedule R scripts/processes with the Windows task scheduler.
• JoGall/soccermatics - Tools for visualisation and analysis of soccer tracking and event data
• Jfortin1/ComBatHarmonization - Harmonization of multi-site imaging data with ComBat
• davidsjoberg/ggsankey - Make sankey, alluvial and sankey bump plots in ggplot
• business-science/anomalize - Tidy anomaly detection
• eddelbuettel/littler - A scripting and command-line front-end for GNU R
• gadenbuie/ggpomological - 🍑 Pomological plot theme for ggplot2
• juliasilge/widyr - Widen, process, and re-tidy a dataset
• jkeirstead/scholar - Analyse citation data from Google Scholar
• carmonalab/ProjecTILs - Interpretation of cell states using reference single-cell maps
• rasmusab/bayesian_first_aid - Inside every classical test there is a Bayesian model trying to get out.
• r-lib/memoise - Easy memoisation for R
• r3fang/SnapATAC - Analysis Pipeline for Single Cell ATAC-seq
• ccodwg/Covid19Canada - Epidemiological Data from the COVID-19 Epidemic in Canada (archived)
• xuranw/MuSiC - Multi-subject Single Cell Deconvolution
• pachterlab/sleuth - Differential analysis of RNA-Seq
• r-lib/slider - Sliding Window Functions
• hplgit/doconce - Lightweight markup language - document once, include anywhere
• IndrajeetPatil/statsExpressions - Tidy data frames and expressions with statistical summaries 📜
• synth-inference/synthdid - Synthetic difference in differences
• gaospecial/ggVennDiagram - A 'ggplot2' implement of Venn Diagram.
• navinlabcode/copykat
• HaobinZhou/Get_MR - A package for running MR In batches and in parallel quickly
• braverock/quantstrat
• tidyverts/feasts - Feature Extraction And Statistics for Time Series
• fivethirtyeight/guns-data
• jmzeng1314/my_WGCNA
• echen/dirichlet-process - Introduction to Nonparametric Bayes, Infinite Mixture Models, and the Dirichlet Process (+ McDonald's)
• prisma-flowdiagram/PRISMA2020 - Produce PRISMA-2020 compliant flow diagrams
• JamesHWade/gpttools - gpttools extends gptstudio for package development to help you document code, write tests, or even explain code
• sdparekh/zUMIs - zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
• vqv/ggbiplot - A biplot based on ggplot2
• rexyai/RestRserve - R web API framework for building high-performance microservices and app backends
• cole-trapnell-lab/monocle-release
• prouast/cryptocurrency-analysis - Analysis and visualisation of the cryptocurrency market
• clauswilke/ggjoy - Deprecated. Please use ggridges.
• yihui/servr - A simple HTTP server in R
• datalorax/slidex - Convert PowerPoint Slides to xaringan (remark.js) Slides
• raivokolde/pheatmap - Pretty heatmaps
• EpiModel/EpiModel - Mathematical Modeling of Infectious Disease Dynamics
• kosukeimai/qss - Supplementary Materials for ``Quantitative Social Science: An Introduction''
• sigven/pcgr - Personal Cancer Genome Reporter (PCGR)
• martyput/MDP_book
• TheEconomist/the-economist-war-fire-model - Source code and data for The Economist's Ukraine war-fire model
• cgroza/GraffiTE - GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.
• coolbutuseless/dplyr-cli - Manipulate CSV files on the command line using dplyr
• eddelbuettel/tint - Tint is not Tufte
• genomicsclass/dagdata - Data for the HarvardX courses: PH525x
• plger/scDblFinder - Methods for detecting doublets in single-cell sequencing data
• ggsegverse/ggseg - Plotting tool for brain atlases, in ggplot
• showteeth/ggcoverage - Visualize and annotate genomic coverage with ggplot2
• yufree/sciguide - 现代科研指北
• digitalcytometry/cytotrace2 - CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
• facebookincubator/GeoLift - GeoLift is an end-to-end geo-experimental methodology based on Synthetic Control Methods used to measure the true incremental effect (Lift) of ad campaign.
• jtlovell/GENESPACE
• shenlab-sinai/ngsplot - Quick mining and visualization of NGS data by integrating genomic databases
• chasemc/electricShine - Create Standalone Installable Shiny Apps (archived)
• R-CoderDotCom/econocharts - Microeconomics/macroeconomics charts in ggplot2
• bioFAM/MOFA - Multi-Omics Factor Analysis
• florianhartig/DHARMa - Diagnostics for HierArchical Regession Models
• kevinsblake/NatParksPalettes - Color palette package inspired by National Parks
• AtherEnergy/ggTimeSeries - Time series visualisation
• Raymo111/Raymo111 - My awesome profile README
• adw96/biostat561 - Course materials for BIOST561
• pharmaverse/teal - Exploratory Web Apps for Analyzing Clinical Trial Data
• jldbc/coffee-quality-database - Building the Coffee Quality Institute Database
• lazappi/clustree - Visualise Clusterings at Different Resolutions
• dariyasydykova/open_projects - This repository contains ROC and precision-recall curve animations
• qrmtutorial/qrm - qrm
• YuLab-SMU/ChIPseeker - :dart: ChIP peak Annotation, Comparison and Visualization
• YuLab-SMU/enrichplot - Visualization of Functional Enrichment Result
• asheshrambachan/HonestDiD - Robust inference in difference-in-differences and event study designs
• r-lib/bench - High Precision Timing of R Expressions
• thomasp85/fiery - A flexible and lightweight web server
• toddwschneider/nyc-citibike-data - NYC Citi Bike system data and analysis
• rstudio/thematic - Theme ggplot2, lattice, and base graphics based on a few simple settings.
• daattali/shiny-server - My personal Shiny server
• digitalcytometry/ecotyper - EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
• rmcelreath/causal_salad_2021 - One day course on causal inference, MPI-EVA 9 September 2021
• ryantibs/conformal - Tools for conformal inference in regression
• saezlab/liana - LIANA: a LIgand-receptor ANalysis frAmework
• lindeloev/job - job: free Your RStudio Console
• ropensci/tesseract - Bindings to Tesseract OCR engine for R
• cdeterman/gpuR - R interface to use GPU's
• Gibbsdavidl/CatterPlots - Did you ever wish you could make scatter plots with cat shaped points? Now you can!
• mlverse/chattr
• HelenaLC/muscat - Multi-sample multi-group scRNA-seq analysis tools
• rcastelo/GSVA - Gene set variation analysis
• jiabowang/GAPIT - Genome Association Predict Integrate Tools
• shufinskiy/nba_data - NBA play-by-play data from stats.nba.com, data.nba.com, pbpstats.com, and also shots information with season 1996/97
• ZJUFanLab/scCATCH - Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
• johnmyleswhite/SimpleAintEasy - A compendium of the pitfalls and problems that arise when using standard statistical methods
• hhenoida/dataanalytics - This is repository is to be used alongwith with Training Provided through LMS of Henry Harvin Education
• IrinaStatsLab/Awesome-CGM - List of CGM datasets
• rakshitha123/TSForecasting - This repository contains the implementations related to the experiments of a set of publicly available datasets that are used in the time series forecasting research space.
• ropensci-archive/elastic - R client for the Elasticsearch HTTP API (archived)
• ShinyEd/intro-stats - Shiny apps for introductory statistics
• daranzolin/ViewPipeSteps - Create tabs of View() output for each chained pipe
• ipea/r5r
• etiennebacher/tidypolars - More efficient tidyverse code, using polars in the background
• braverock/PerformanceAnalytics
• rladies/starter-kit - Some useful R-Ladies files :purple_heart: :earth_africa: (archived)
• VPetukhov/ggrastr - Raster geoms for ggplot2
• BorchLab/escape - Easy single cell analysis platform for enrichment
• corynissen/foodborne_classifier - The classifier used in the http://foodborne.smartchicagoapps.org/ application.
• easystats/datawizard - Magic potions to clean and transform your data 🧙
• rudeboybert/JSE_OkCupid - Journal of Statistical Education Paper on Using OkCupid Data for Data Science Courses
• davidaknowles/leafcutter - Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
• Tychobra/polished - Authentication and Administration for Shiny apps
• posit-dev/r-shinylive
• ericrayanderson/shinymaterial
• liamrevell/phytools
• Oshlack/splatter - Simple simulation of single-cell RNA sequencing data
• zdk123/SpiecEasi - Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
• kharchenkolab/numbat - Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
• StateOfCalifornia/CalCAT - Application for assessing the many different models available for understanding COVID19 transmission and spread
• Terminus2049/Wechatscope - 被删微信公众号文章存档
• TheUpshot/leo-senate-model - Code and data for The Upshot's Senate model.
• igordot/genomics - A collection of scripts and notes related to genomics and bioinformatics
• huayc09/SeuratExtend
• zachmayer/caretEnsemble - caret models all the way down :turtle:
• hadley/data-baby-names - Distribution of US baby names, 1880-2008
• idmn/ggview - Ggplot picture previewer
• rstudio/shinymeta - Record and expose Shiny app logic using metaprogramming
• trestletech/shinyAce - Integrating the Ace editor with Shiny.
• rasmusab/beepr - The package that sounds as it is called.
• rstudio/htmltools - Tools for HTML generation and output
• cellgeni/schard - reticulate-free single cell format conversion
• dynverse/dynbenchmark - Comparison of methods for trajectory inference on single-cell data 🥇
• rstudio-conf-2020/time-series-forecasting
• toddwschneider/agency-loan-level - Loan-level analysis of Fannie Mae and Freddie Mac data
• broadinstitute/ichorCNA - Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
• thengl/GeoMLA - Machine Learning algorithms for spatial and spatiotemporal data
• immunogenomics/presto - Fast Wilcoxon and auROC
• roblanf/minion_qc - Quality control for MinION sequencing data
• YuLab-SMU/ggmsa - :traffic_light: Visualizing publication-quality multiple sequence alignment using ggplot2
• cboettig/knitcitations - :package: Generate citations for knitr markdown and html files
• forkonlp/N2H4 - 네이버 뉴스 수집을 위한 도구
• pablobarbera/twitter_ideology - Estimating Ideological Positions with Twitter Data
• SGDDNB/ShinyCell - Shiny Interactive Web Apps for Single-Cell Data
• tesselle/khroma - Colour Schemes for Scientific Data Visualization - :exclamation: Moved to https://codeberg.org/tesselle/khroma
• docopt/docopt.R - Command-line interface description language for R (http://docopt.org)
• VictimOfMaths/COVID-19 - Plots and analysis relating to the pandemic
• cnicault/tidytuesday - My contribution to the #TidyTuesday challenge, with the visualizations and code
• dtm2451/dittoSeq - Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
• Irrationone/cellassign - Automated, probabilistic assignment of cell types in scRNA-seq data
• MarcElosua/SPOTlight - Spatial Transcriptomics Capture Location Deconvolution
• carmonalab/UCell - Gene set scoring for single-cell data
• choonghyunryu/dlookr - Tools for Data Diagnosis, Exploration, Transformation
• carmonalab/GeneNMF - Methods to discover gene programs on single-cell data
• zhangyuqing/ComBat-seq - Batch effect adjustment based on negative binomial regression for RNA sequencing count data
• dill/emoGG - :chart_with_upwards_trend::heart_eyes_cat: Emoji in ggplot2 :heart_eyes_cat::chart_with_upwards_trend:
• flujoo/gm - R Package for Music Creation
• harrelfe/Hmisc - Harrell Miscellaneous
• NickCH-K/causalbook - Replication code and downloadable example data sets for The Effect
• tidymodels/workflows - Modeling Workflows
• eparker12/nCoV_tracker - Covid 2019 interactive mapping tool
• l-magnificence/Mime - Machine learning-based integration model with elegant performance
• mjskay/ggblend - Support for blend modes in ggplot2
• davidsjoberg/ggstream - A package to make streamplots
• JJ/top-github-users-data - Data obtained with the top-github-users script
• MatthewBJane/ThemePark - Fun ggplot themes for popular culture
• aertslab/AUCell - AUCell: score single cells with gene regulatory networks
• GeneticistHere/ggplot2-20-journal-cases
• r-lib/keyring - :closed_lock_with_key: Access the system credential store from R
• freeCodeCamp/2016-new-coder-survey - (archived)
• funkyheatmap/funkyheatmap - Visualising data frames as funky heatmaps 📊
• jokergoo/EnrichedHeatmap - make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
• lionel-/ggstance - Horizontal ggplot2 components
• TickingClock1992/RIdeogram
• hadley/genzplyr - dplyr but make it bussin fr fr no cap
• wu-yc/scMetabolism - Quantifying metabolism activity at the single-cell resolution
• kjhealy/socviz - Support files for a data visualization course and book
• linjf15/MR_tricks
• weizhouUMICH/SAIGE
• kassambara/ggcorrplot - Visualization of a correlation matrix using ggplot2
• zumbov2/votemapswitzerland - A Swiss version of the famous visualization «Land doesn't vote, people do.»
• financial-astrology-research/financial-astrology-stats - We research the correlations between astrology planet cycles and price effect for multiples financial markets using statistics and machine learning techniques. Join the community discussions at Telegram:
• JoniColeman/gwas_scripts - Codebook from my GWAS cookbook
• coolbutuseless/ggrgl - 3d extension to ggplot
• stefanedwards/lemon - 🍋 Lemon --- Freshing up your ggplots
• dayoonkwon/BioAge - Biological Age Calculations Using Several Biomarker Algorithms
• bgreenwell/vip - Variable Importance Plots (VIPs)
• datawookie/emayili - An R package for sending email messages.
• decryptr/decryptr - An extensible API for breaking captchas
• xuzhougeng/Learn-Bioinformatics-by-RNA-seq
• edward130603/BayesSpace - Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.
• ifunam/programacion-estadistica-r
• compbiomed/singleCellTK - Interactively analyze single cell genomic data
• AnalytixWare/ShinySky - Various UI widgets/components not part of Shiny e.g. alerts, styled buttons
• CSSEGISandData/COVID-19_Unified-Dataset - Unified COVID-19 Dataset
• dynverse/dyno - Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
• trinker/qdap - Quantitative Discourse Analysis Package: Bridging the gap between qualitative data and quantitative analysis
• davidski/evaluator - ⚖Open Source Toolkit for Quantitative Risk Assessment
• rpremraj/mailR - A utility to send emails from the R programming environment
• TongZhou2017/itol.toolkit - Helper Functions for Interactive Tree Of Life (iTOL)
• YosefLab/VISION - Signature Analysis and Visualization for Single-Cell RNA-seq
• moodymudskipper/typed - Support Types for Variables, Arguments, and Return Values
• neurorestore/Libra
• eddelbuettel/anytime - Anything to POSIXct or Date Converter
• RLesur/Rcade - Games to procrastinate with RStudio
• trevorld/r-optparse - command-line optional argument parser
• ropensci/ghql - GraphQL R client
• r-lib/Rapp - Build CLI applications in R
• swarm-lab/Rvision - Basic computer vision library for R
• tidyverse/hms - A simple class for storing time-of-day values
• HenrikBengtsson/Wishlist-for-R - Features and tweaks to R that I and others would love to see - feel free to add yours!
• leonawicz/tabr - R package: tabr. Notation-based and tidy music data analysis and transcription.
• coolbutuseless/tickle - Easily create UIs in base R
• richfitz/storr - :package: Object cacher for R
• hadley/secure - Secure private R data in public packages
• maju116/rplatypus - R package for object detection and image segmentation.